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A B C D E F G H I J K L M N O P R S T U V W X Y

## A

absSum() - Method in class jm.jigl.RealGrayImage
  Adds absolute value of all the values together
absSum() - Method in class jm.jigl.GrayImage
  Adds absolute value of all the values together
acquisitionTime - Variable in class jm.kidney.AnalysisDialog
acquisitionTimes - Variable in class jm.sit.SITAnalysis
actionPerformed(ActionEvent) - Method in class jm.extension.ExStackWindow
  Faengt durch Mausklicks oder Tastatureingaben erzeugte Events ab.
actionPerformed(ActionEvent) - Method in class jm.extension.AddRoiDialog
  Faengt Mausklicks auf die Schaltflaechen des Dialog ab.
actionPerformed(ActionEvent) - Method in class jm.kidney.PresetsDialog
  Routine zur Nachrichtenbehandung von Mausklicks und Tastatureingaben (Return)
actionPerformed(ActionEvent) - Method in class jm.kidney.ManualMover
  Routine zur Nachrichtenbehandung von Mausklicks.
actionPerformed(ActionEvent) - Method in class jm.kidney.JSplashScreen
  Process Actions events Dismiss the window on a timeout
actionPerformed(ActionEvent) - Method in class jm.kidney.AnalysisDialog
  Routine zur Nachrichtenbehandung von Mausklicks oder Tastatureingaben.
actionPerformed(ActionEvent) - Method in class jm.scaler.ScaleDialog
  Routine zur Nachrichtenbehandung von Mausklicks sowie Tastatureingaben (Return)
actionPerformed(ActionEvent) - Method in class jm.sit.SITResults
  Faengt durch Klicks der Maustasten oder Druecken der Eingabetaste ausgeloeste Events ab.
actionPerformed(ActionEvent) - Method in class jm.sit.SITAdjuster
  Routine zur Nachrichtenbehandung von Mausklicks oder Tastatureingaben.
add(Complex) - Method in class jm.jigl.Complex
  Adds this complex number to another complex number
add(Complex, Complex) - Static method in class jm.jigl.Complex
  Adds two complex numbers
add(ComplexImage) - Method in class jm.jigl.ComplexImage
  Adds another ComplexImage to this image
add(ComplexImage, ROI, ROI) - Method in class jm.jigl.ComplexImage
  Adds a Region of Interest in another GrayImage from a Region of Interest of this image
add(ComplexSignal) - Method in class jm.jigl.ComplexSignal
  Adds another ComplexSignal to this signal
add(ComplexSignal, ROI, ROI) - Method in class jm.jigl.ComplexSignal
  Adds a Region of Interest in another GraySignal from a Region of Interest of this signal
add(DiscreteSignal) - Method in class jm.jigl.DiscreteSignal
  Adds another DiscreteSignal to this signal
add(DiscreteSignal, ROI, ROI) - Method in class jm.jigl.DiscreteSignal
  Divides this signal's Region of Interest by a Region of Interest of another DiscreteSignal
add(double) - Method in class jm.jigl.Complex
  Adds a constant to the real part of this complex number
add(float) - Method in class jm.jigl.RealSignal
  Adds a value to all the samples in this signal
add(float) - Method in class jm.jigl.RealGrayImage
  Adds a value to all the pixels in this image
add(float, float) - Method in class jm.jigl.ComplexSignal
  Adds a value to all the pixels in this signal
add(float, float) - Method in class jm.jigl.ComplexImage
  Adds a value to all the pixels in this image
add(float, float, ROI) - Method in class jm.jigl.ComplexSignal
  Adds a value to all the pixels in a Region of Interest
add(float, float, ROI) - Method in class jm.jigl.ComplexImage
  Adds a value to all the pixels in a Region of Interest
add(float, ROI) - Method in class jm.jigl.RealSignal
  Adds a value to all the samples in in a Region of Interest
add(float, ROI) - Method in class jm.jigl.RealGrayImage
  Adds a value to all the pixels in a Region of Interest
add(GrayImage) - Method in class jm.jigl.GrayImage
  Adds another GrayImage to this image
add(GrayImage, ROI, ROI) - Method in class jm.jigl.GrayImage
  Adds a Region of Interest in another GrayImage to a Region of Interest of this image
add(int) - Method in class jm.jigl.GrayImage
  Adds a value to all the pixels in this image
add(int) - Method in class jm.jigl.DiscreteSignal
  Adds a value to all the samples in this signal
add(int, float) - Method in class jm.jigl.RealSignal
  Adds a value to a single sample
add(int, float, float) - Method in class jm.jigl.ComplexSignal
  Adds a value to a single pixel
add(int, float, float, ROI) - Method in class jm.jigl.ComplexSignal
  Adds a value to a single pixel in a Region of Interest
add(int, float, ROI) - Method in class jm.jigl.RealSignal
  Adds a value to a single sample
add(int, int) - Method in class jm.jigl.DiscreteSignal
  Adds a value to a single sample
add(int, int, float) - Method in class jm.jigl.RealGrayImage
  Adds a value to a single pixel
add(int, int, float, float) - Method in class jm.jigl.ComplexImage
  Adds a value to a single pixel
add(int, int, float, float, ROI) - Method in class jm.jigl.ComplexImage
  Adds a value to a single pixel in a Region of Interest
add(int, int, float, ROI) - Method in class jm.jigl.RealGrayImage
  Adds a value to a single pixel in a Region of Interest
add(int, int, int) - Method in class jm.jigl.GrayImage
  Adds a value to a single pixel
add(int, int, int, ROI) - Method in class jm.jigl.GrayImage
  Adds a value to a single pixel in a Region of Interest
add(int, int, ROI) - Method in class jm.jigl.DiscreteSignal
  Adds a value to a single sample
add(int, ROI) - Method in class jm.jigl.GrayImage
  Adds a value to all the pixels in a Region of Interest
add(int, ROI) - Method in class jm.jigl.DiscreteSignal
  Adds a value to all the samples in in a Region of Interest
add(RealGrayImage) - Method in class jm.jigl.RealGrayImage
  Adds another RealGrayImage to this image
add(RealGrayImage, ROI, ROI) - Method in class jm.jigl.RealGrayImage
  Adds a Region of Interest in another RealGrayImage to a Region of Interest of this image
add(RealSignal) - Method in class jm.jigl.RealSignal
  Adds another RealSignal to this signal
add(RealSignal, ROI, ROI) - Method in class jm.jigl.RealSignal
  Divides this signal's Region of Interest by a Region of Interest of another RealSignal
addbuffer(int, int) - Method in class jm.jigl.RealSignal
  Makes a copy of this image with a buffer so the resulting image has a width x and height y
addbuffer(int, int) - Method in class jm.jigl.DiscreteSignal
  Makes a copy of this image with a buffer so the resulting image has a width x and height y
addbuffer(int, int, int) - Method in class jm.jigl.GrayImage
  Makes a copy of this image with a buffer so the resulting image has a width x and height y
addbuffer(int, int, int, int, int) - Method in class jm.jigl.GrayImage
  Makes a copy of this image with a buffer so the resulting image has a width x and height y
AddRoiDialog - class jm.extension.AddRoiDialog.
  Zeigt einen kleinen Dialog zur Abfrage, ob ROIs fuer ein Bild oder alle Bilder der Sequenz festgelegt werden sollen.
AddRoiDialog(Frame, String, String) - Constructor for class jm.extension.AddRoiDialog
  Der Konstruktor.
addSum() - Method in class jm.jigl.RealGrayImage
  Adds all the values together
addSum() - Method in class jm.jigl.GrayImage
  Adds all the values together
addToRoiArray(int, int, int, Roi) - Method in class jm.extension.ExImageCanvas
  Fuegt eine uebergenen ROI einem ROI-Array entsprechend des uebergebenen Gewebetyps zu.
addToRoiArray(int, int, Roi) - Method in class jm.extension.ExImageCanvas
  Fuegt eine uebergenen ROI einem ROI-Array entsprechend des uebergebenen Gewebetyps zu.
adjustmentValueChanged(AdjustmentEvent) - Method in class jm.extension.ExStackWindow
  Faengt Bewegungen des Schiebereglers zum Durchblaettern der Bilderstapels ab.
ALL - Static variable in class jm.extension.AddRoiDialog
analysisAccuracy - Variable in class jm.kidney.AnalysisDialog
analysisDialog - Variable in class jm.sit.SITAnalysis
AnalysisDialog - class jm.kidney.AnalysisDialog.
  Diese Klasse stellt das Hauptfenster des Plugins zur renalen Funktionsanalyse dar.
AnalysisDialog(ImageWindow) - Constructor for class jm.kidney.AnalysisDialog
  Der Konstruktor.
append(String) - Method in class jm.cepstrum.ResultLog
  Schreibt einen String an das Ende des Logfiles.
apply(Image) - Method in class jm.jigl.Shift
  Applies the shift to this image
apply(Signal) - Method in interface jm.jigl.LevelOp
  Applies the appropriate operation to an Signal
apply(Signal) - Method in class jm.jigl.ByteSize
  ByteSizes the range of this signal to an arbitrary min/max
arg() - Method in class jm.jigl.Complex
  Performs the function on the complex number
autoClassification - Variable in class jm.sit.SITAnalysis
awtToolTip - Variable in class jm.extension.ExImageCanvas
AwtToolTip - class jm.extension.AwtToolTip.
  Diese Klasse ermoeglicht die Darstellung von Tooltips auf dem ImageCanvas von ImageJ.
AwtToolTip() - Constructor for class jm.extension.AwtToolTip
AwtToolTipHelper - class jm.extension.AwtToolTipHelper.
  Hilfsklasse zur Darstellung von Tooltips auf dem ImageCanvas von ImageJ.
AwtToolTipHelper() - Constructor for class jm.extension.AwtToolTipHelper

## B

BadImageException - exception jm.jigl.BadImageException.
  Class declaration Exception for and image that is corrupted
BadImageException() - Constructor for class jm.jigl.BadImageException
BicubicInterpolation - class jm.cepstrum.BicubicInterpolation.
  Diese Klasse realisiert die bikubische Interpolation.
BicubicInterpolation(byte[], int, int) - Constructor for class jm.cepstrum.BicubicInterpolation
  Der Konstruktor.
BicubicInterpolation(int[], int, int) - Constructor for class jm.cepstrum.BicubicInterpolation
  Der Konstruktor.
BicubicInterpolation(short[], int, int) - Constructor for class jm.cepstrum.BicubicInterpolation
  Der Konstruktor.
block() - Method in class jm.kidney.JSplashScreen
  This method is called in order to block the application until the splash screen times out or is dismissed.
box_draw - Variable in class jm.jigl.ImageCanvas
  Used as a toggle on the ImageCanvas
ByteSize - class jm.jigl.ByteSize.
  Performs a ByteSize operation on an signal.
byteSize() - Method in class jm.jigl.RealSignal
  Scales the range of this signal to byte (0..255)
byteSize() - Method in class jm.jigl.RealGrayImage
  Scales the range of this image to byte (0..255)
byteSize() - Method in class jm.jigl.GrayImage
  Scales the range of this image to byte (0..255)
byteSize() - Method in class jm.jigl.DiscreteSignal
  Scales the range of this signal to byte (0..255)
ByteSize() - Constructor for class jm.jigl.ByteSize
  Initilizes ByteSize for use with integers
byteSize(ROI) - Method in class jm.jigl.RealSignal
  Scales the range of a Region of Interest to byte (0..255)
byteSize(ROI) - Method in class jm.jigl.DiscreteSignal
  Scales the range of a Region of Interest to byte (0..255)

## C

calcPixelCurve(int, int) - Method in class jm.sit.SITAnalysis
  Berechnet der SIT-Kurven fuer Nierenmark und Nierenrinden entsprechend der Klassifizierung der Pixel.
calculateTranslation(Image, Image, Point) - Method in class jm.cepstrum.Cepstrum
  Haupt-Berechnungsmethode dieser Klasse.
CANCEL - Static variable in class jm.extension.AddRoiDialog
centerAt(int, int) - Method in class jm.sit.ImageLabel
  Moves the image so that it is centered at the specified location, as opposed to the move method of Component which places the top left corner at the specified location.
Cepstrum - class jm.cepstrum.Cepstrum.
  Fuehrt die eigentliche Berechnung der Kepstrum-Filterung durch.
Cepstrum() - Constructor for class jm.cepstrum.Cepstrum
  Der Konstruktor.
cepstrumAccuracy - Variable in class jm.kidney.PresetsDialog
CepstrumAnalysis - class jm.cepstrum.CepstrumAnalysis.
  Realisiert den Algothimus zur Kepstrum-Filterung der Nierensequenzen.
CepstrumAnalysis(AnalysisDialog, Roi, Roi) - Constructor for class jm.cepstrum.CepstrumAnalysis
  Der Konstruktor.
cepstrumFinished() - Method in class jm.kidney.AnalysisDialog
  Wird von der Kepstrum-Berechnungsklasse aufgerufen, wenn die Filterung abgeschlossen ist.
cepstrumQuality - Variable in class jm.cepstrum.CepstrumAnalysis
cepstrumResult - Variable in class jm.kidney.AnalysisDialog
classificationRange - Variable in class jm.kidney.PresetsDialog
classificationRange - Variable in class jm.kidney.AnalysisDialog
classifyPixels(int, double, double, double) - Method in class jm.sit.SITAnalysis
  Fuehrt die Klassifizeirung der Pixel durch.
classTresholdCortex - Variable in class jm.sit.SITAnalysis
classTresholdMedulla - Variable in class jm.sit.SITAnalysis
classTresholdPelvis - Variable in class jm.sit.SITAnalysis
clear() - Method in class jm.jigl.RealSignal
  Clears the signal to zero
clear() - Method in class jm.jigl.RealGrayImage
  Clears the image to zero
clear() - Method in class jm.jigl.GrayImage
  Clears the image to zero
clear() - Method in class jm.jigl.DiscreteSignal
  Clears the signal to zero
clear(float) - Method in class jm.jigl.RealSignal
  Clears to constant value
clear(float) - Method in class jm.jigl.RealGrayImage
  Clears to constant value
clear(float, ROI) - Method in class jm.jigl.RealSignal
  Clears to constant value
clear(int) - Method in class jm.jigl.GrayImage
  Clears to constant value
clear(int) - Method in class jm.jigl.DiscreteSignal
  Clears to constant value
clear(int, ROI) - Method in class jm.jigl.DiscreteSignal
  Clears to constant value
clear(ROI) - Method in class jm.jigl.RealSignal
  Clears the signal to zero
clear(ROI) - Method in class jm.jigl.DiscreteSignal
  Clears the signal to zero
clip(int, int) - Method in class jm.jigl.RealSignal
  Clips the range of this signal to an arbitrary min/max
clip(int, int) - Method in class jm.jigl.RealGrayImage
  Clips the range of this image to an arbitrary min/max
clip(int, int) - Method in class jm.jigl.GrayImage
  Clips the range of this image to an arbitrary min/max
clip(int, int) - Method in class jm.jigl.DiscreteSignal
  Clips the range of this signal to an arbitrary min/max
clip(int, int, ROI) - Method in class jm.jigl.RealSignal
  Clips the range of in a Region of Interest to an arbitrary min/max
clip(int, int, ROI) - Method in class jm.jigl.RealGrayImage
  Clips the range of this image to an arbitrary min/max in a Region of Interest
clip(int, int, ROI) - Method in class jm.jigl.GrayImage
  Clips the range of this image to an arbitrary min/max in a Region of Interest
clip(int, int, ROI) - Method in class jm.jigl.DiscreteSignal
  Clips the range of in a Region of Interest to an arbitrary min/max
close() - Method in class jm.extension.ExStackWindow
  Wird aufgerufen, wenn das Fenster geschlossen wird.
close() - Method in class jm.extension.ExImageWindow
  Ueberschreibt die close-Methode der Oberklasse.
close() - Method in class jm.jigl.SignalOutputStream
  Closes the file
close() - Method in class jm.jigl.SignalInputStream
  Closes the InputStream
close() - Method in class jm.jigl.ImageInputStream
  Closes the InputStream
ColorModelNotSupportedException - exception jm.jigl.ColorModelNotSupportedException.
  Exception for a Color model that is not supported
ColorModelNotSupportedException() - Constructor for class jm.jigl.ColorModelNotSupportedException
ColorModelUnknownException - exception jm.jigl.ColorModelUnknownException.
  Exception for a color model is not defined by JIGL
ColorModelUnknownException() - Constructor for class jm.jigl.ColorModelUnknownException
Complex - class jm.jigl.Complex.
  Complex Number Operation
Complex() - Constructor for class jm.jigl.Complex
  Sets the real and imaginary part of the complex number to zero
Complex(Complex) - Constructor for class jm.jigl.Complex
  Initilizes the complex number to z
Complex(double, double) - Constructor for class jm.jigl.Complex
  Initilizes the real and imaginary part to a and b repectively
ComplexImage - class jm.jigl.ComplexImage.
  A complex image is a set of two real gray image planes.
ComplexImage() - Constructor for class jm.jigl.ComplexImage
  Creates a ComplexImage with height and width of zero and the real and imaginary planes set to null
ComplexImage(ComplexImage) - Constructor for class jm.jigl.ComplexImage
  Creates a ComplexImage as a shallow copy of a complex image
ComplexImage(Image) - Constructor for class jm.jigl.ComplexImage
  Creates a ComplexImage from the standard java.awt.Image
ComplexImage(int, int) - Constructor for class jm.jigl.ComplexImage
  Creates a ComplexImage with height and width of x and y repectively
ComplexSignal - class jm.jigl.ComplexSignal.
  A complex signal is a set of two real gray signal planes.
ComplexSignal() - Constructor for class jm.jigl.ComplexSignal
  Creates a ComplexSignal with height and width of zero and the real and imaginary planes set to null
ComplexSignal(ComplexSignal) - Constructor for class jm.jigl.ComplexSignal
  Creates a ComplexSignal as a shallow copy of a complex signal
ComplexSignal(int) - Constructor for class jm.jigl.ComplexSignal
  Creates a ComplexSignal with height and width of x and y repectively
componentHidden(ComponentEvent) - Method in class jm.extension.ExImageCanvas
  Faengt ComponentEvents ab.
componentMoved(ComponentEvent) - Method in class jm.extension.ExImageCanvas
  Faengt ComponentEvents ab.
componentResized(ComponentEvent) - Method in class jm.extension.ExImageCanvas
  Faengt ComponentEvents ab.
componentShown(ComponentEvent) - Method in class jm.extension.ExImageCanvas
  Faengt ComponentEvents ab.
conj() - Method in class jm.jigl.Complex
  Performs the conjuction function on the complex number
contains(int, int) - Method in class jm.sit.ImageLabel
  Determines if the x and y (in the ImageLabel's own coordinate system) is inside the ImageLabel.
ConvertSignal - class jm.jigl.ConvertSignal.
  Signal type conversions.
ConvertSignal() - Constructor for class jm.jigl.ConvertSignal
  Default Constructor (doesn't do anything)
convolve(DiscreteSignal) - Method in class jm.jigl.DiscreteSignal
  Performs convolution in place with a kernel signal on this signal.
convolve(DiscreteSignal, ROI) - Method in class jm.jigl.DiscreteSignal
  Performs convolution in place with a kernel signal on a Region of Interest.
convolve(RealSignal) - Method in class jm.jigl.RealSignal
  Performs convolution in place with a kernel signal on this signal.
convolve(RealSignal, ROI) - Method in class jm.jigl.RealSignal
  Performs convolution in place with a kernel signal on a Region of Interest.
copy() - Method in interface jm.jigl.Signal
  Returns a deep copy of a signal
copy() - Method in class jm.jigl.RealSignal
  Makes a deep copy of this signal
copy() - Method in class jm.jigl.RealGrayImage
  Makes a deep copy of this image
copy() - Method in interface jm.jigl.Image
  Returns a deep copy of an image
copy() - Method in class jm.jigl.GrayImage
  Makes a deep copy of this image
copy() - Method in class jm.jigl.DiscreteSignal
  Makes a deep copy of this signal
copy() - Method in class jm.jigl.ComplexSignal
  Makes a deep copy of this signal
copy() - Method in class jm.jigl.ComplexImage
  Makes a deep copy of this image
copy(ROI) - Method in class jm.jigl.RealSignal
  Makes a deep copy in a Region of Interest
copy(ROI) - Method in class jm.jigl.RealGrayImage
  Makes a deep copy of a Region of Interest
copy(ROI) - Method in interface jm.jigl.Image
  Method declaration
copy(ROI) - Method in class jm.jigl.GrayImage
  Makes a deep copy of a Region of Interest
copy(ROI) - Method in class jm.jigl.DiscreteSignal
  Makes a deep copy in a Region of Interest
copy(ROI) - Method in class jm.jigl.ComplexSignal
  Makes a deep copy of a Region of Interest
copy(ROI) - Method in class jm.jigl.ComplexImage
  Makes a deep copy of a Region of Interest
CORTEX - Static variable in class jm.util.JMConst
cos() - Method in class jm.jigl.Complex
  Returns the cosine of this complex number
cosh() - Method in class jm.jigl.Complex
  Returns the hyperbolic cosine of this complex number
createTranslation(GrayImage, int, int, int, int) - Method in class jm.cepstrum.Cepstrum
  Deprecated. Wird nur noch fuer Testzwecke gebraucht
CURRENT - Static variable in class jm.extension.AddRoiDialog

## D

data - Variable in class jm.jigl.SignalOutputStream
  Data to dump
data - Variable in class jm.jigl.SignalInputStream
data - Variable in class jm.jigl.RealSignal
  One dimensional float array
data - Variable in class jm.jigl.RealGrayImage
  Two dimensional float array
data - Variable in class jm.jigl.ImageInputStream
  InputStream for the Data (Protected)
data - Variable in class jm.jigl.GrayImage
  Two dimensional integer array
data - Variable in class jm.jigl.DiscreteSignal
  One dimensional integer array
data() - Method in class jm.jigl.RealSignal
  Makes a shallow copy of a JIGL signal's sample buffer
data() - Method in class jm.jigl.DiscreteSignal
  Makes a shallow copy of a JIGL signal's sample buffer
debug(String) - Method in class jm.sit.ImageLabel
  Calls System.out.println if the debug variable is true; does nothing otherwise.
deleteRois(int, int) - Method in class jm.extension.ExImageCanvas
  Loescht alle ROIs des angegebenen Gewebetyps fuer alle Halbbilder der Sequenz.
devScaleFactor - Variable in class jm.sit.SITAnalysis
diff(ComplexImage) - Method in class jm.jigl.ComplexImage
  Subtracts a RealColorImage from this image and returns the absolute value
diff(ComplexSignal) - Method in class jm.jigl.ComplexSignal
  Subtracts the second signal from the first and returns the absolute value
diff(DiscreteSignal) - Method in class jm.jigl.DiscreteSignal
  Subtracts the second signal from the first and returns the absolute value
diff(GrayImage) - Method in class jm.jigl.GrayImage
  Subtracts the second image from the first and returns the absolute value
diff(RealGrayImage) - Method in class jm.jigl.RealGrayImage
  Subtracts the second image from the first and returns the absolute value
diff(RealSignal) - Method in class jm.jigl.RealSignal
  Subtracts the second signal from the first and returns the absolute value
DiscreteSignal - class jm.jigl.DiscreteSignal.
  A discrete signal is a 1-d of shorts DiscreteSignal implements Signal
DiscreteSignal() - Constructor for class jm.jigl.DiscreteSignal
  Creates an empty one dimensional DiscreteSignal with a height and width of zero
DiscreteSignal(DiscreteSignal) - Constructor for class jm.jigl.DiscreteSignal
  Creates a one dimensional DiscreteSignal (shallow copy) for a DiscreteSignal
DiscreteSignal(int) - Constructor for class jm.jigl.DiscreteSignal
  Creates an empty one dimensional of length x
div(Complex) - Method in class jm.jigl.Complex
  Divides this complex number by another complex number
div(Complex, Complex) - Static method in class jm.jigl.Complex
  Divides two complex numbers
div(double) - Method in class jm.jigl.Complex
  Divides this complex number by a constant
divide(ComplexImage) - Method in class jm.jigl.ComplexImage
  Divides this image by another ComplexImage
divide(ComplexImage, ROI, ROI) - Method in class jm.jigl.ComplexImage
  Divides by a Region of Interest in this image by a Region of Interest of another ComplexImage
divide(ComplexSignal) - Method in class jm.jigl.ComplexSignal
  Divides this signal by another ComplexSignal
divide(ComplexSignal, ROI, ROI) - Method in class jm.jigl.ComplexSignal
  Divides by a Region of Interest in this signal by a Region of Interest of another ComplexSignal
divide(DiscreteSignal) - Method in class jm.jigl.DiscreteSignal
  Divides this signal by a DiscreteSignal
divide(DiscreteSignal, ROI, ROI) - Method in class jm.jigl.DiscreteSignal
  Multiplies a Region of Interest of another DiscreteSignal to a Region of Interest of this signal
divide(float) - Method in class jm.jigl.RealSignal
  Divides all the samples in this signal by a value
divide(float) - Method in class jm.jigl.RealGrayImage
  Divides all the pixels in this image by a value
divide(float, float) - Method in class jm.jigl.ComplexSignal
  Divides all the pixels by a value in this signal
divide(float, float) - Method in class jm.jigl.ComplexImage
  Divides all the pixels by a value in this image
divide(float, float, ROI) - Method in class jm.jigl.ComplexSignal
  Divides all the pixels by a value in a Region of Interest
divide(float, float, ROI) - Method in class jm.jigl.ComplexImage
  Divides all the pixels by a value in a Region of Interest
divide(float, ROI) - Method in class jm.jigl.RealSignal
  Divides all the samples in in a Region of Interest by a value
divide(float, ROI) - Method in class jm.jigl.RealGrayImage
  Divides all the pixels by a value in a Region of Interest
divide(GrayImage) - Method in class jm.jigl.GrayImage
  Divides this image by a GrayImage
divide(GrayImage, ROI, ROI) - Method in class jm.jigl.GrayImage
  Divides by a Region of Interest in this image by a Region of Interest of another GrayImage
divide(int) - Method in class jm.jigl.GrayImage
  Divides all the pixels in this image by a value
divide(int) - Method in class jm.jigl.DiscreteSignal
  Divides all the samples in this signal by a value
divide(int, float) - Method in class jm.jigl.RealSignal
  Divides a single sample by a value
divide(int, float, float) - Method in class jm.jigl.ComplexSignal
  Divide a single pixel by a value
divide(int, float, float, ROI) - Method in class jm.jigl.ComplexSignal
  Divide a single pixel by a value in a Region of Interest
divide(int, float, ROI) - Method in class jm.jigl.RealSignal
  Divides a single sample by a value
divide(int, int) - Method in class jm.jigl.DiscreteSignal
  Divides a single sample by a value
divide(int, int, float) - Method in class jm.jigl.RealGrayImage
  Divides a single pixel by a value
divide(int, int, float, float) - Method in class jm.jigl.ComplexImage
  Divide a single pixel by a value
divide(int, int, float, float, ROI) - Method in class jm.jigl.ComplexImage
  Divide a single pixel by a value in a Region of Interest
divide(int, int, float, ROI) - Method in class jm.jigl.RealGrayImage
  Divides a single pixel by a value in a Region of Interest
divide(int, int, int) - Method in class jm.jigl.GrayImage
  Divides a single pixel by a value
divide(int, int, int, ROI) - Method in class jm.jigl.GrayImage
  Divides a single pixel by a value in a Region of Interest
divide(int, int, ROI) - Method in class jm.jigl.DiscreteSignal
  Divides a single sample by a value
divide(int, ROI) - Method in class jm.jigl.GrayImage
  Divides all the pixels by a value in a Region of Interest
divide(int, ROI) - Method in class jm.jigl.DiscreteSignal
  Divides all the samples in in a Region of Interest by a value
divide(RealGrayImage) - Method in class jm.jigl.RealGrayImage
  Divides this image by a RealGrayImage
divide(RealGrayImage, ROI, ROI) - Method in class jm.jigl.RealGrayImage
  Divides by a Region of Interest in this image by a Region of Interest of another RealGrayImage
divide(RealSignal) - Method in class jm.jigl.RealSignal
  Divides this signal by a RealSignal
divide(RealSignal, ROI, ROI) - Method in class jm.jigl.RealSignal
  Multiplies a Region of Interest of another RealSignal to a Region of Interest of this signal
doFFT(Image, boolean) - Static method in class jm.jigl.FFT
  Do FFT calculation @param im image to do FFT on.
done - Variable in class jm.extension.ExStackWindow
dontAskAgain - Variable in class jm.extension.AddRoiDialog
doSegmentation(ImageProcessor) - Method in class jm.segmentation.KidneyExtraction
  Hauptberechnungsklasse dieser Methode.
doubleValue() - Method in class jm.jigl.Complex
  Returns the double value of this complex number
drawInfo(Graphics) - Method in class jm.extension.ExImageWindow
  Hilfmethode zum zeichnen des Informations-String mit Bildeinganschaften, Bildgroesse und Bilsausmassen am oberen Rand innerhalb des Fenstersrahmens.
drawRect(Graphics, int, int, int, int, int, Color) - Method in class jm.sit.ImageLabel
  Draws a rectangle with the specified OUTSIDE left, top, width, and height.
DummyObserver - class jm.jigl.DummyObserver.
  Class declaration
DummyObserver() - Constructor for class jm.jigl.DummyObserver

## E

enableMinDiff - Variable in class jm.kidney.AnalysisDialog
endThreads() - Method in class jm.extension.ExImageCanvas
  Beendet die laufenden Threads (AwtToolTip!)
equals(Complex) - Method in class jm.jigl.Complex
  Compares this complex number to another Complex number
error - Variable in class jm.cepstrum.CepstrumAnalysis
error - Variable in class jm.sit.SITAnalysis
ExImageCanvas - class jm.extension.ExImageCanvas.
  Diese Klasse erweitert den ImageCanvas von ImageJ.
ExImageCanvas(ImagePlus) - Constructor for class jm.extension.ExImageCanvas
  Der Konstruktor.
ExImageWindow - class jm.extension.ExImageWindow.
  Diese Klasse erweitert das ImageWindow von ImageJ.
ExImageWindow(ImagePlus) - Constructor for class jm.extension.ExImageWindow
  Der Konstruktor.
ExJButton - class jm.extension.ExJButton.
  Diese Klasse erweitert die Klasse JButton von Swing.
ExJButton() - Constructor for class jm.extension.ExJButton
  Der Konstruktor.
exp() - Method in class jm.jigl.Complex
  Returns the exponential function of this complex number
exportValues() - Method in class jm.sit.SITResults
  Hier werden die Werte SIT-Kurven als Textdatei exportiert.
ExStackWindow - class jm.extension.ExStackWindow.
  Diese Klasse erweitert das StackWindow von ImageJ.
ExStackWindow(ImagePlus) - Constructor for class jm.extension.ExStackWindow
  Der Konstruktor.

## F

FFT - class jm.jigl.FFT.
  Class declaration Modifikation der urspruenglichen jigl Paketstruktur durch Jens Martin Aenderungen im Sourcecode sind mit [JM] gekennzeichnet.
FFT() - Constructor for class jm.jigl.FFT
  Dummy Constructor
fft2Stack - Variable in class jm.cepstrum.Cepstrum
fftStack - Variable in class jm.cepstrum.Cepstrum
FileExtensionNotSupportedException - exception jm.jigl.FileExtensionNotSupportedException.
  Exception for a filename extension
FileExtensionNotSupportedException() - Constructor for class jm.jigl.FileExtensionNotSupportedException
filterLog(RealGrayImage) - Method in class jm.cepstrum.Cepstrum
  Logarithmiert ein reell-wertiges Grauwertbild.
filterSobel(ByteProcessor) - Method in class jm.cepstrum.CepstrumAnalysis
  Fuehrt die Sobel-Filterung des eingegebenen Bildes durch.
finalize() - Method in class jm.extension.AwtToolTip
  Fragt ab, ob z.Zt ein ToolTip angezeigt werden soll.
findLocalMax(ComplexImage) - Method in class jm.cepstrum.Cepstrum
  Sucht dein lokales Maximum im Suchbereich der Kepstralebene.
finished - Variable in class jm.cepstrum.CepstrumAnalysis
finished - Variable in class jm.sit.SITAnalysis
finished - Variable in class jm.sit.SITAdjuster
floatValue() - Method in class jm.jigl.Complex
  Returns the float value of this complex number
focusGained(FocusEvent) - Method in class jm.kidney.PresetsDialog
  Routine zur Nachrichtenbehandung von Fokuswechseln.
focusGained(FocusEvent) - Method in class jm.scaler.ScaleDialog
  Routine zur Nachrichtenbehandung von Fokuswechseln der Elemente der GUI.
focusLost(FocusEvent) - Method in class jm.kidney.PresetsDialog
  Routine zur Nachrichtenbehandung von Fokuswechseln.
focusLost(FocusEvent) - Method in class jm.scaler.ScaleDialog
  Routine zur Nachrichtenbehandung von Fokuswechseln der Elemente der GUI.
forward(Image) - Static method in class jm.jigl.FFT
  Do Forward FFT calculation
fovX - Variable in class jm.kidney.AnalysisDialog
fovY - Variable in class jm.kidney.AnalysisDialog

## G

get(int) - Method in class jm.jigl.RealSignal
  Returns the sample value at the given x, y value
get(int) - Method in class jm.jigl.DiscreteSignal
  Returns the sample value at the given x, y value
get(int, int) - Method in class jm.jigl.RealGrayImage
  Returns the pixel value at the given x, y value
get(int, int) - Method in class jm.jigl.GrayImage
  Returns the pixel value at the given x, y value
get(int, ROI) - Method in class jm.jigl.RealSignal
  Returns the sample value at the given x, y value
get(int, ROI) - Method in class jm.jigl.DiscreteSignal
  Returns the sample value at the given x, y value
getApplySobel() - Method in class jm.cepstrum.Cepstrum
  Hilfsmethode.
getApplyWindow() - Method in class jm.cepstrum.Cepstrum
  Hilfsmethode.
getBorder() - Method in class jm.sit.ImageLabel
  Gets the border width.
getBorderColor() - Method in class jm.sit.ImageLabel
  Gets the border color.
getDefaultImageString() - Static method in class jm.sit.ImageLabel
  Returns the string representing the URL that will be used if none is supplied in the constructor.
getDestroyInputImages() - Method in class jm.cepstrum.Cepstrum
  Hilfsmethode.
getEnabledForSIT() - Method in class jm.extension.ExImageCanvas
  Liefert ein Array von Booleans zurueck entsprechend der Zulassung der Bildhaeflten der ganzen Sequenz fuer die Berechnung der SIT-Kurven ROIs fuer die angegebene Bildhaelfte zurueck.
getHeight() - Method in class jm.sit.ImageLabel
  Gets the height (image height plus 2x border).
getImag(int) - Method in class jm.jigl.ComplexSignal
  Returns the pixel value at the given x value of the imaginary plane
getImag(int, int) - Method in class jm.jigl.ComplexImage
  Returns the pixel value at the given x, y value of the imaginary plane
getImag(int, int, ROI) - Method in class jm.jigl.ComplexImage
  Returns the pixel value at the given x, y value of a Region of Interest in the imaginary plane
getImag(int, ROI) - Method in class jm.jigl.ComplexSignal
  Returns the pixel value at the given x value of a Region of Interest in the imaginary plane
getImage() - Method in class jm.jigl.ImageCanvas
  Returns the JIGL image
getImage() - Method in class jm.sit.ImageLabel
  The Image associated with the ImageLabel.
getImageFromFile(String) - Method in class jm.jigl.ImageCanvas
  Gets a JIGL image from a file.
getImageString() - Method in class jm.sit.ImageLabel
  Returns the string representing the URL of image.
getJavaImage() - Method in class jm.jigl.RealGrayImage
  Turns this image into a Java Image (java.awt.Image).
getJavaImage() - Method in class jm.jigl.ImageCanvas
  Returns the Java image
getJavaImage() - Method in interface jm.jigl.Image
  Turns this image into a Java Image (java.awt.Image).
getJavaImage() - Method in class jm.jigl.GrayImage
  Turns this image into a Java Image (java.awt.Image).
getJavaImage() - Method in class jm.jigl.ComplexImage
  Returns the Java Image from this image
getJavaImage(Image) - Method in class jm.jigl.ImageCanvas
  Takes a jigl image as input, converts it to a java image, and returns the java image.
getMagnitudeImage() - Method in class jm.jigl.ComplexImage
  Returns the MagnitudeImage (RealGrayImage) of the this ComplexImage
getMinimumSize() - Method in class jm.sit.ImageLabel
  Used by layout managers to calculate the smallest size allocated for the Component.
getPixel(double, double) - Method in class jm.cepstrum.BicubicInterpolation
  Einzige Methode der Klasse.
getPreferredSize() - Method in class jm.sit.ImageLabel
  Used by layout managers to calculate the usual size allocated for the Component.
getReal(int) - Method in class jm.jigl.ComplexSignal
  Returns the pixel value at the given x value of the real plane
getReal(int, int) - Method in class jm.jigl.ComplexImage
  Returns the pixel value at the given x, y value of the real plane
getReal(int, int, ROI) - Method in class jm.jigl.ComplexImage
  Returns the pixel value at the given x, y value of a Region of Interest in the real plane
getReal(int, ROI) - Method in class jm.jigl.ComplexSignal
  Returns the pixel value at the given x value of a Region of Interest in the real plane
getRoi(int) - Method in class jm.extension.ExImageCanvas
  Liefert ein Array mit den Haupt-ROIs fuer die angegebene Bildhaelfte zurueck.
getRoi(int, int) - Method in class jm.extension.ExImageCanvas
  Liefert ein Array mit den Gewebespezifischen ROIs fuer die angegebene Bildhaelfte zurueck.
getWidth() - Method in class jm.sit.ImageLabel
  Gets the width (image width plus twice border).
getXMarks() - Method in class jm.sit.JLabelResults
  Liest die Anzahl der Unterteilungsstriche auf der x-Achse des Koordinatensystems.
getYMarks() - Method in class jm.sit.JLabelResults
  Liest die Anzahl der Unterteilugnen der Y-Achse.
GrayImage - class jm.jigl.GrayImage.
  GrayImage is a 2-d array of shorts
GrayImage() - Constructor for class jm.jigl.GrayImage
  Creates an empty two dimensional GrayImage with a height and width of zero
GrayImage(GrayImage) - Constructor for class jm.jigl.GrayImage
  Creates a two dimensional GrayImage (shallow copy) from GrayImage img
GrayImage(Image) - Constructor for class jm.jigl.GrayImage
  Creates an two dimensional GrayImage from the standard java.awt.Image
GrayImage(int, int) - Constructor for class jm.jigl.GrayImage
  Creates a two dimensional GrayImage with a height and width of x and y repectively
GrayImage(int, int, short[]) - Constructor for class jm.jigl.GrayImage
  Creates a two dimensional GrayImage with a height and width of x and y repectively
GrayImage(short[][]) - Constructor for class jm.jigl.GrayImage
  Creates a two dimensional GrayImage from a two dimensional array
GridBagConstraints2 - class jm.util.GridBagConstraints2.
  Diese Klasse implementiert einen alternativen Konstruktor fuer `GridBagConstraints`.
GridBagConstraints2(int, int, int, int, double, double, int, int, Insets, int, int) - Constructor for class jm.util.GridBagConstraints2
  Constructor declaration
guiInit() - Method in class jm.kidney.PresetsDialog
  Zusaetzliche Formatierungen von Objekten der GUI
guiInit() - Method in class jm.kidney.ManualMover
  Zusaetzliche Formatierungen von Objekten der GUI

## H

hasExplicitSize() - Method in class jm.sit.ImageLabel
  Has the ImageLabel been given an explicit size?
hasPatientInfo - Variable in class jm.kidney.AnalysisDialog

## I

ignoreFirst - Variable in class jm.kidney.PresetsDialog
IllegalPBMFormatException - exception jm.jigl.IllegalPBMFormatException.
  Exception for an signal that has the correct magic number but incorrect format
IllegalPBMFormatException() - Constructor for class jm.jigl.IllegalPBMFormatException
imag - Variable in class jm.jigl.ComplexSignal
  The Imaginary part of the signal
imag - Variable in class jm.jigl.ComplexImage
  The Imaginary part of the image
imag() - Method in class jm.jigl.ComplexSignal
  Makes a shallow copy of the imaginary plane
imag() - Method in class jm.jigl.ComplexImage
  Returns the imaginary plane of this image
imag() - Method in class jm.jigl.Complex
  Return the imaginary part of the imaginary number
imag(double) - Method in class jm.jigl.Complex
  Set the imaginary part of the complex number and returns old value
image - Variable in class jm.jigl.ImageCanvas
  Java image
Image - interface jm.jigl.Image.
  Image is the interface for ColorImage, ComplexImage, ConvertSignal, DiscreteSignal In addition, all typed Image classes must support the following typed methods: get set clear ...
imageCanvas - Variable in class jm.kidney.AnalysisDialog
ImageCanvas - class jm.jigl.ImageCanvas.
  ImageCanvas is a class made to facilitate the displaying of a JIGL image
ImageCanvas() - Constructor for class jm.jigl.ImageCanvas
  Creates an empty ImageCanvas
ImageCanvas(ComplexImage) - Constructor for class jm.jigl.ImageCanvas
  Creates an ImageCanvas from a ComplexImage
ImageCanvas(GrayImage) - Constructor for class jm.jigl.ImageCanvas
  Creates an ImageCanvas from a GrayImage
ImageCanvas(Image) - Constructor for class jm.jigl.ImageCanvas
  Creates an ImageCanvas from a JIGL Image
ImageCanvas(RealGrayImage) - Constructor for class jm.jigl.ImageCanvas
  Creates an ImageCanvas from a RealGrayImage
ImageCanvas(String) - Constructor for class jm.jigl.ImageCanvas
  Creates an ImageCanvas from a file
ImageInputStream - class jm.jigl.ImageInputStream.
  Class declaration
ImageInputStream(ImageInputStream) - Constructor for class jm.jigl.ImageInputStream
  Makes a new ImageInputStream from another ImageInputStream
ImageInputStream(String) - Constructor for class jm.jigl.ImageInputStream
  Opens a ImageInputStream from a filename.
ImageInputStream(String, int) - Constructor for class jm.jigl.ImageInputStream
  Opens a ImageInputStream from a filename
ImageLabel - class jm.sit.ImageLabel.
  A class for displaying images.
ImageLabel() - Constructor for class jm.sit.ImageLabel
  Create an ImageLabel with the default image.
ImageLabel(Image) - Constructor for class jm.sit.ImageLabel
  Create an ImageLabel using the image specified.
ImageLabel(String) - Constructor for class jm.sit.ImageLabel
  Create an ImageLabel using the image at URL specified by the string.
ImageLabel(URL) - Constructor for class jm.sit.ImageLabel
  Create an ImageLabel using the image at URL specified.
ImageLabel(URL, String) - Constructor for class jm.sit.ImageLabel
  Create an ImageLabel using the image in the file in the specified directory.
ImageNotSupportedException - exception jm.jigl.ImageNotSupportedException.
  Exception for an image that is not supported by a given operation
ImageNotSupportedException() - Constructor for class jm.jigl.ImageNotSupportedException
imagePlus - Variable in class jm.kidney.AnalysisDialog
imageStack - Variable in class jm.kidney.AnalysisDialog
imageUpdate(Image, int, int, int, int, int) - Method in class jm.jigl.DummyObserver
  Method declaration
imageWindow - Variable in class jm.kidney.AnalysisDialog
img - Variable in class jm.jigl.ImageInputStream
  Image that will be loaded (Protected)
imHeight() - Method in class jm.jigl.ImageCanvas
  Returns the image height
imWidth() - Method in class jm.jigl.ImageCanvas
  Returns the image width
initResultWindow(int) - Method in class jm.sit.SITAnalysis
  Initialisiert das Dialog-Fenster zur Anzeige der berechneten Kurven.
institutionName - Variable in class jm.kidney.AnalysisDialog
interpolateMissing - Variable in class jm.kidney.PresetsDialog
interpolateNullValues - Variable in class jm.kidney.AnalysisDialog
intValue() - Method in class jm.jigl.Complex
  Returns the integer value of this complex number
inverse(Image) - Static method in class jm.jigl.FFT
  Do Inverse FFT calculation
ipLeftKidney - Variable in class jm.sit.SITAnalysis
ipRightKidney - Variable in class jm.sit.SITAnalysis
isCancelPressed - Variable in class jm.kidney.AnalysisDialog
isDebugging() - Method in class jm.sit.ImageLabel
  Is the debugging flag set?
isMouseOver() - Method in class jm.extension.AwtToolTipHelper
  Fragt ab, ob sich der Mauszeiger ueber dem dem ToolTip zugeordnete GUI-Objekt befindes.
isStartAnalysisPressed - Variable in class jm.kidney.AnalysisDialog

## J

jimage - Variable in class jm.jigl.ImageCanvas
  JIGL image
JLabelResults - class jm.sit.JLabelResults.
  GUI-Element zu Anzeige der berechneten SIT-Kurven.
JLabelResults() - Constructor for class jm.sit.JLabelResults
  Der Konstruktor.
jm.cepstrum - package jm.cepstrum
jm.extension - package jm.extension
jm.jigl - package jm.jigl
jm.kidney - package jm.kidney
jm.scaler - package jm.scaler
jm.segmentation - package jm.segmentation
jm.sit - package jm.sit
jm.util - package jm.util
JMConst - class jm.util.JMConst.
  Diese Klasse definiert Konstanten, die in vielen Methoden des Projektes vorkommen.
JMConst() - Constructor for class jm.util.JMConst
JMUtil - class jm.util.JMUtil.
  Diese Klasse enthaelt mehreres Hilfsfunktionen, die haeufiger in verschiedenen Methoden anderer Klassen benoetigt werden.
JMUtil() - Constructor for class jm.util.JMUtil
JSplashScreen - class jm.kidney.JSplashScreen.
  Implements a basic splash screen for the Swing Application Framework.
JSplashScreen(JFrame, URL, int) - Constructor for class jm.kidney.JSplashScreen
  JSplashScreen constructs a splash screen (JWindow).

## K

keyPressed(KeyEvent) - Method in class jm.extension.ExImageCanvas
  Faengt Eingaben von der Tastatur ab.
keyPressed(KeyEvent) - Method in class jm.kidney.PresetsDialog
  Routine zur Nachrichtenbehandung von Tastatureingaben.
keyPressed(KeyEvent) - Method in class jm.kidney.JSplashScreen
  Process key events
keyPressed(KeyEvent) - Method in class jm.scaler.ScaleDialog
  Faengt Eingaben von der Tastatur ab.
keyReleased(KeyEvent) - Method in class jm.extension.ExImageCanvas
  Faengt Eingaben von der Tastatur ab.
keyReleased(KeyEvent) - Method in class jm.kidney.PresetsDialog
  Routine zur Nachrichtenbehandung von Tastatureingaben.
keyReleased(KeyEvent) - Method in class jm.kidney.JSplashScreen
  Process key events
keyReleased(KeyEvent) - Method in class jm.scaler.ScaleDialog
  Faengt Eingaben von der Tastatur ab.
keyTyped(KeyEvent) - Method in class jm.extension.ExImageCanvas
  Faengt Eingaben von der Tastatur ab.
keyTyped(KeyEvent) - Method in class jm.kidney.PresetsDialog
  Routine zur Nachrichtenbehandung von Tastatureingaben.
keyTyped(KeyEvent) - Method in class jm.kidney.JSplashScreen
  Process key events
keyTyped(KeyEvent) - Method in class jm.scaler.ScaleDialog
  Faengt Eingaben von der Tastatur ab.
KidneyExtraction - class jm.segmentation.KidneyExtraction.
  Diese Klasse versucht, die Kontur der Niere durch ein Strahlverfolgungs-Verfahren zu realisieren.
KidneyExtraction(ImagePlus) - Constructor for class jm.segmentation.KidneyExtraction
  Der Konstruktor.

## L

LEFT - Static variable in class jm.util.JMConst
leftRefImage - Variable in class jm.sit.SITAnalysis
length - Variable in class jm.jigl.RealSignal
  Length of the Signal
length - Variable in class jm.jigl.DiscreteSignal
  Length of the Signal
length - Variable in class jm.jigl.ComplexSignal
  Cartesian length of the signal
length() - Method in interface jm.jigl.Signal
  length of the signal
length() - Method in class jm.jigl.RealSignal
  Returns the length of this signal
length() - Method in class jm.jigl.DiscreteSignal
  Returns the length of this signal
length() - Method in class jm.jigl.ComplexSignal
  Returns the length of the signal
LevelOp - interface jm.jigl.LevelOp.
  LevelOp implements many Level Operations
lock() - Method in class jm.extension.ExStackWindow
  Sperrt das Fenster fuer weitere Eingaben von maus oder Tastatur.
lockLeftRoi(Roi, boolean, boolean) - Method in class jm.kidney.AnalysisDialog
  Setzt den Zustand der linken Roi.
lockRightRoi(Roi, boolean, boolean) - Method in class jm.kidney.AnalysisDialog
  Setzt den Zustand der rechten Roi.
log() - Method in class jm.jigl.Complex
  Returns the logarithmic function of this complex number
longValue() - Method in class jm.jigl.Complex
  Returns the long value of this complex number
lx() - Method in class jm.jigl.ROI
  Returns the lower x corner of the Region of Interest
ly() - Method in class jm.jigl.ROI
  Returns the lower y corner of the Region of Interest

## M

MAIN - Static variable in class jm.util.JMConst
main(String[]) - Static method in class jm.jigl.GrayImage
  Method declaration
main(String[]) - Static method in class jm.jigl.ByteSize
  Method declaration
ManualMover - class jm.kidney.ManualMover.
  Diese Klasse ermoeglicht das manuelle Verschieben von Halbbildern zur Nachjustierung von schlechten Ergebnissen der Kaptrum-Filterung.
ManualMover(ImagePlus, int, int, Rectangle) - Constructor for class jm.kidney.ManualMover
  Der Konstruktor.
matrix - Variable in class jm.kidney.AnalysisDialog
matrixX - Variable in class jm.kidney.AnalysisDialog
matrixY - Variable in class jm.kidney.AnalysisDialog
max() - Method in class jm.jigl.RealSignal
  Finds the maximum value of this signal
max() - Method in class jm.jigl.RealGrayImage
  Finds the maximum value of this image
max() - Method in class jm.jigl.GrayImage
  Finds the maximum value of this image
max() - Method in class jm.jigl.DiscreteSignal
  Finds the maximum value of this signal
max() - Method in class jm.jigl.ComplexSignal
  Returns the maximum magnitude in this signal
max() - Method in class jm.jigl.ComplexImage
  Returns the maximum magnitude of the complex number in this image
max(ROI) - Method in class jm.jigl.RealSignal
  Finds the maximum value of in a Region of Interest
max(ROI) - Method in class jm.jigl.RealGrayImage
  Finds the maximum value in a Region of Interest
max(ROI) - Method in class jm.jigl.GrayImage
  Finds the maximum value in a Region of Interest
max(ROI) - Method in class jm.jigl.DiscreteSignal
  Finds the maximum value of in a Region of Interest
max(ROI) - Method in class jm.jigl.ComplexSignal
  Returns the maximum magnitude in a Region of Interest
max(ROI) - Method in class jm.jigl.ComplexImage
  Returns the maximum magnitude of a Region of Interest
MAXROIS - Static variable in class jm.extension.ExImageCanvas
maxval - Variable in class jm.jigl.SignalInputStream
maxval - Variable in class jm.jigl.ImageInputStream
  Maximum value (integer) of the Image (Protected)
maxvalf - Variable in class jm.jigl.SignalInputStream
maxvalf - Variable in class jm.jigl.ImageInputStream
  Maximum value (float) of the Image (Protected)
median(int) - Method in class jm.jigl.RealSignal
  Performs median filter on this signal
median(int) - Method in class jm.jigl.RealGrayImage
  Performs median filter on this image
median(int) - Method in class jm.jigl.GrayImage
  Performs median filter on this image
median(int) - Method in class jm.jigl.DiscreteSignal
  Performs median filter on this signal
median(int, ROI) - Method in class jm.jigl.RealSignal
  Performs median filter on a Region of Interest
median(int, ROI) - Method in class jm.jigl.RealGrayImage
  Performs median filter in a Region of Interest
median(int, ROI) - Method in class jm.jigl.GrayImage
  Performs median filter in a Region of Interest
median(int, ROI) - Method in class jm.jigl.DiscreteSignal
  Performs median filter on a Region of Interest
MEDULLA - Static variable in class jm.util.JMConst
min() - Method in class jm.jigl.RealSignal
  Finds the minimum value of this signal
min() - Method in class jm.jigl.RealGrayImage
  Finds the minimum value of this image
min() - Method in class jm.jigl.GrayImage
  Finds the minimum value of this image
min() - Method in class jm.jigl.DiscreteSignal
  Finds the minimum value of this signal
min() - Method in class jm.jigl.ComplexSignal
  Returns the minimum magnitude in this signal
min() - Method in class jm.jigl.ComplexImage
  Returns the minimum magnitude of the complex number in this image
min(ROI) - Method in class jm.jigl.RealSignal
  Finds the minimum value of in a Region of Interest
min(ROI) - Method in class jm.jigl.RealGrayImage
  Finds the minimum value in a Region of Interest
min(ROI) - Method in class jm.jigl.GrayImage
  Finds the minimum value in a Region of Interest
min(ROI) - Method in class jm.jigl.DiscreteSignal
  Finds the minimum value of in a Region of Interest
min(ROI) - Method in class jm.jigl.ComplexSignal
  Returns the minimum magnitude in a Region of Interest
min(ROI) - Method in class jm.jigl.ComplexImage
  Returns the minimum magnitude of a Region of Interest
minDiff - Variable in class jm.kidney.PresetsDialog
minDiffSwitch - Variable in class jm.kidney.PresetsDialog
mod() - Method in class jm.jigl.Complex
  Performs the mod function on the complex number
mouse_clicked - Variable in class jm.jigl.ImageCanvas
  Used as a toggle on the ImageCanvas
mouseClicked(MouseEvent) - Method in class jm.extension.ExJButton
  Faengt Mausklicks ab.
mouseClicked(MouseEvent) - Method in class jm.extension.ExImageCanvas
  Faengt Mausklicks auf den Canvas ab.
mouseClicked(MouseEvent) - Method in class jm.kidney.PresetsDialog
  Routine zur Nachrichtenbehandung von Maustasten.
mouseClicked(MouseEvent) - Method in class jm.kidney.JSplashScreen
  Process mouse events Dismiss the window on a mouse click, ignore rest.
mouseClicked(MouseEvent) - Method in class jm.sit.SITResults
  Faengt durch Klicks der Maustasten ausgeloeste Events ab.
mouseClicked(MouseEvent) - Method in class jm.sit.JLabelResults
  Faengt Events ab, die durch Klicken der Maustasten oder Bewegung der Maus ausgeloest werden.
mouseDragged(MouseEvent) - Method in class jm.sit.JLabelResults
  Faengt Events ab, die durch Klicken der Maustasten oder Bewegung der Maus ausgeloest werden.
mouseEntered(MouseEvent) - Method in class jm.extension.ExJButton
  Faengt Mausbewegungen ab und stellt fest, ob der Mauszeiger in die Flaeche des Buttons hereinbewegt wurde.
mouseEntered(MouseEvent) - Method in class jm.extension.AwtToolTipHelper
  Faengt Bewebungen des Mauszeigers ab und stellt fest, ob der Mauszeiger in die Flaeche des dem ToolTip zugeordnete GUI-Objekt eingetreten ist.
mouseEntered(MouseEvent) - Method in class jm.kidney.PresetsDialog
  Routine zur Nachrichtenbehandung von Mausbewegungen.
mouseEntered(MouseEvent) - Method in class jm.kidney.JSplashScreen
  Process mouse events
mouseEntered(MouseEvent) - Method in class jm.sit.SITResults
  Faengt durch Mausbewegungen ausgeloeste Events ab.
mouseEntered(MouseEvent) - Method in class jm.sit.JLabelResults
  Faengt Events ab, die durch Mausbewegungen ausgeloest werden.
mouseExited(MouseEvent) - Method in class jm.extension.ExJButton
  Faengt Mausbewegungen ab und stellt fest, ob der Mauszeiger aus der Flaeche des Buttons herausbewegt wurde.
mouseExited(MouseEvent) - Method in class jm.extension.AwtToolTipHelper
  Faengt Bewebungen des Mauszeigers ab und stellt fest, ob der Mauszeiger aus der Flaeche des dem ToolTip zugeordnete GUI-Objekt ausgetreten ist.
mouseExited(MouseEvent) - Method in class jm.kidney.PresetsDialog
  Routine zur Nachrichtenbehandung von Mausbewegungen.
mouseExited(MouseEvent) - Method in class jm.kidney.JSplashScreen
  Process mouse events
mouseExited(MouseEvent) - Method in class jm.sit.SITResults
  Faengt durch Mausbewegungen ausgeloeste Events ab.
mouseExited(MouseEvent) - Method in class jm.sit.JLabelResults
  Faengt Events ab, die durch Mausbewegungen ausgeloest werden.
mouselx - Variable in class jm.jigl.ImageCanvas
  Lower x corner of the selection box
mousely - Variable in class jm.jigl.ImageCanvas
  Lower y corner of the selection box
mouseMoved(MouseEvent) - Method in class jm.extension.ExImageCanvas
  Faengt Bewegungen der Maus ueber dem Canvas ab.
mouseMoved(MouseEvent) - Method in class jm.extension.AwtToolTip
  Faengt Bewegungen der Maus ab, um die Timer zu steuern.
mouseMoved(MouseEvent) - Method in class jm.sit.JLabelResults
  Faengt Events ab, die durch Klicken der Maustasten oder Bewegung der Maus ausgeloest werden.
mousePressed(MouseEvent) - Method in class jm.extension.ExJButton
  Faengt Mausklicks ab.
mousePressed(MouseEvent) - Method in class jm.extension.ExImageCanvas
  Faengt Mausklicks auf den Canvas ab.
mousePressed(MouseEvent) - Method in class jm.kidney.PresetsDialog
  Routine zur Nachrichtenbehandung von Maustasten.
mousePressed(MouseEvent) - Method in class jm.kidney.JSplashScreen
  Process mouse events
mousePressed(MouseEvent) - Method in class jm.sit.SITResults
  Faengt durch Klicks der Maustasten ausgeloeste Events ab.
mousePressed(MouseEvent) - Method in class jm.sit.JLabelResults
  Faengt Events ab, die durch Klicken der Maustasten oder Bewegung der Maus ausgeloest werden.
mouseReleased(MouseEvent) - Method in class jm.extension.ExJButton
  Faengt Mausklicks ab.
mouseReleased(MouseEvent) - Method in class jm.extension.ExImageCanvas
  Faengt Mausklicks auf den Canvas ab.
mouseReleased(MouseEvent) - Method in class jm.kidney.PresetsDialog
  Routine zur Nachrichtenbehandung von Maustasten.
mouseReleased(MouseEvent) - Method in class jm.kidney.JSplashScreen
  Process mouse events
mouseReleased(MouseEvent) - Method in class jm.sit.SITResults
  Faengt durch Klicks der Maustasten ausgeloeste Events ab.
mouseReleased(MouseEvent) - Method in class jm.sit.JLabelResults
  Faengt Events ab, die durch Klicken der Maustasten oder Bewegung der Maus ausgeloest werden.
mouseux - Variable in class jm.jigl.ImageCanvas
  Upper x corner of the selection box
mouseuy - Variable in class jm.jigl.ImageCanvas
  Upper y corner of the selection box
mult(Complex) - Method in class jm.jigl.Complex
  Multiplies this complex number by another complex number
mult(Complex, Complex) - Static method in class jm.jigl.Complex
  Multiplies two complex numbers
mult(double) - Method in class jm.jigl.Complex
  Multiplies this complex number by a constant
multiply(ComplexImage) - Method in class jm.jigl.ComplexImage
  Multiplies this image by another ComplexImage
multiply(ComplexImage, ROI, ROI) - Method in class jm.jigl.ComplexImage
  Multiplies a Region of Interest of another GrayImage by a Region of Interest of this image
multiply(ComplexSignal) - Method in class jm.jigl.ComplexSignal
  Multiplies this signal by another ComplexSignal
multiply(ComplexSignal, ROI, ROI) - Method in class jm.jigl.ComplexSignal
  Multiplies a Region of Interest of another GraySignal by a Region of Interest of this signal
multiply(DiscreteSignal) - Method in class jm.jigl.DiscreteSignal
  Multiplies a DiscreteSignal by this signal
multiply(DiscreteSignal, ROI, ROI) - Method in class jm.jigl.DiscreteSignal
  Subtracts a Region of Interest from another DiscreteSignal from a Region of Interest of this signal
multiply(float) - Method in class jm.jigl.RealSignal
  Multiplies all the samples in this signal by a value
multiply(float) - Method in class jm.jigl.RealGrayImage
  Multiplies all the pixels in this image by a value
multiply(float, float) - Method in class jm.jigl.ComplexSignal
  Multiplies all the pixels in this signal by a value
multiply(float, float) - Method in class jm.jigl.ComplexImage
  Multiplies all the pixels in this image by a value
multiply(float, float, ROI) - Method in class jm.jigl.ComplexSignal
  Multiplies all the pixels by a value in a Region of Interest
multiply(float, float, ROI) - Method in class jm.jigl.ComplexImage
  Multiplies all the pixels by a value in a Region of Interest
multiply(float, ROI) - Method in class jm.jigl.RealSignal
  Multiplies all the samples in in a Region of Interest by a value
multiply(float, ROI) - Method in class jm.jigl.RealGrayImage
  Multiplies all the pixels in a Region of Interest by a value
multiply(GrayImage) - Method in class jm.jigl.GrayImage
  Multiplies a GrayImage by this image
multiply(GrayImage, ROI, ROI) - Method in class jm.jigl.GrayImage
  Multiplies a Region of Interest of another GrayImage by a Region of Interest of this image
multiply(int) - Method in class jm.jigl.GrayImage
  Multiplies all the pixels in this image by a value
multiply(int) - Method in class jm.jigl.DiscreteSignal
  Multiplies all the samples in this signal by a value
multiply(int, float) - Method in class jm.jigl.RealSignal
  Mutiplies a single sample by a value
multiply(int, float, float) - Method in class jm.jigl.ComplexSignal
  Multiply a single pixel by a value
multiply(int, float, float, ROI) - Method in class jm.jigl.ComplexSignal
  Multiply a single pixel by a value in a Region of Interest
multiply(int, float, ROI) - Method in class jm.jigl.RealSignal
  Mutiplies a single sample by a value
multiply(int, int) - Method in class jm.jigl.DiscreteSignal
  Mutiplies a single sample by a value
multiply(int, int, float) - Method in class jm.jigl.RealGrayImage
  Mutiplies a single pixel by a value
multiply(int, int, float, float) - Method in class jm.jigl.ComplexImage
  Multiply a single pixel by a value
multiply(int, int, float, float, ROI) - Method in class jm.jigl.ComplexImage
  Multiply a single pixel by a value in a Region of Interest
multiply(int, int, float, ROI) - Method in class jm.jigl.RealGrayImage
  Mutiplies a single pixel by a value in a Region of Interest
multiply(int, int, int) - Method in class jm.jigl.GrayImage
  Mutiplies a single pixel by a value
multiply(int, int, int, ROI) - Method in class jm.jigl.GrayImage
  Mutiplies a single pixel by a value in a Region of Interest
multiply(int, int, ROI) - Method in class jm.jigl.DiscreteSignal
  Mutiplies a single sample by a value
multiply(int, ROI) - Method in class jm.jigl.GrayImage
  Multiplies all the pixels in a Region of Interest by a value
multiply(int, ROI) - Method in class jm.jigl.DiscreteSignal
  Multiplies all the samples in in a Region of Interest by a value
multiply(RealGrayImage) - Method in class jm.jigl.RealGrayImage
  Multiplies a RealGrayImage by this image
multiply(RealGrayImage, ROI, ROI) - Method in class jm.jigl.RealGrayImage
  Multiplies a Region of Interest of another RealGrayImage by a Region of Interest of this image
multiply(RealSignal) - Method in class jm.jigl.RealSignal
  Multiplies a RealSignal by this signal
multiply(RealSignal, ROI, ROI) - Method in class jm.jigl.RealSignal
  Subtracts a Region of Interest from another RealSignal from a Region of Interest of this signal

## N

ndims - Variable in class jm.jigl.SignalOutputStream
  Number of dimensions
ndims - Variable in class jm.jigl.SignalInputStream
  Number of dimensions the signal has
ndims - Variable in class jm.jigl.ImageInputStream
  Number of dimensions the image has (Protected)
ndims() - Method in class jm.jigl.SignalOutputStream
  Returns the number of dimensions
ndims() - Method in class jm.jigl.SignalInputStream
  Returns the number of Dimensions that the signal has
ndims() - Method in class jm.jigl.ImageInputStream
  Returns the number of Dimensions that the image has
newResultWindow - Variable in class jm.kidney.AnalysisDialog
newwindow - Variable in class jm.scaler.ScaleDialog
newWindow - Variable in class jm.kidney.PresetsDialog
newWindow(boolean) - Method in class jm.cepstrum.CepstrumAnalysis
  Hilfsmethode.
noRois - Variable in class jm.sit.SITAnalysis

## O

okPressed - Variable in class jm.kidney.PresetsDialog
okPressed - Variable in class jm.scaler.ScaleDialog
okPressed - Variable in class jm.sit.SITResults
open(String) - Method in class jm.jigl.SignalOutputStream
  Opens a file
orgStack - Variable in class jm.cepstrum.Cepstrum

## P

paint(Graphics) - Method in class jm.extension.ExJButton
  Ueberschreibung der Paint-Methode der Oberklasse.
paint(Graphics) - Method in class jm.extension.ExImageWindow
  Ueberschreibt die paint-Methode der Oberklasse.
paint(Graphics) - Method in class jm.extension.ExImageCanvas
  Ueberschreibung der Paint-Methode von ImageCanvas.
paint(Graphics) - Method in class jm.jigl.ImageCanvas
  Overrides the paint method for smoother redraw
paint(Graphics) - Method in class jm.sit.SITResults
  Ueberschreibt die paint()-Methode der Oberklasse.
paint(Graphics) - Method in class jm.sit.JLabelResults
  Ueberschreibt die Paint-Mathode der Oberklasse, um das Koordinatensystem sowie die Kurven auf dem Canvas einzuzeichnen.
paint(Graphics) - Method in class jm.sit.ImageLabel
  Draws the image.
patientAge - Variable in class jm.kidney.AnalysisDialog
patientBirth - Variable in class jm.cepstrum.CepstrumAnalysis
patientBirth - Variable in class jm.kidney.AnalysisDialog
patientID - Variable in class jm.kidney.AnalysisDialog
patientName - Variable in class jm.cepstrum.CepstrumAnalysis
patientName - Variable in class jm.kidney.AnalysisDialog
patientSex - Variable in class jm.kidney.AnalysisDialog
patientWeight - Variable in class jm.cepstrum.CepstrumAnalysis
patientWeight - Variable in class jm.kidney.AnalysisDialog
peakAboveAverage - Variable in class jm.cepstrum.Cepstrum
peakQuality - Variable in class jm.cepstrum.Cepstrum
PELVIS - Static variable in class jm.util.JMConst
pixelCountCortex - Variable in class jm.sit.SITAnalysis
pixelCountKidney - Variable in class jm.sit.SITAnalysis
pixelCountMedulla - Variable in class jm.sit.SITAnalysis
pixelSpacingX - Variable in class jm.kidney.AnalysisDialog
pixelSpacingY - Variable in class jm.kidney.AnalysisDialog
pixelX - Variable in class jm.scaler.ScaleDialog
pixelY - Variable in class jm.scaler.ScaleDialog
polar(double, double) - Method in class jm.jigl.Complex
  Performs the polar function on the complex number
pow(double) - Method in class jm.jigl.Complex
  Returns this complex number raised to the a complex number
PresetsDialog - class jm.kidney.PresetsDialog.
  Diese Klasse stellt einen Dialog zur Eingabe der Voreinstellungen dar.
PresetsDialog(AnalysisDialog) - Constructor for class jm.kidney.PresetsDialog
  Der Konstruktor.
presetsDialogClosed() - Method in class jm.kidney.AnalysisDialog
  Wird aufgerufen, wenn das Presets-Fenster durch Klick auf die Cancel- oder OK-Schaltflaeche geschlossen wird.
propertiesOk - Variable in class jm.kidney.AnalysisDialog
ps2Stack - Variable in class jm.cepstrum.Cepstrum
psStack - Variable in class jm.cepstrum.Cepstrum

## R

rasterTransformation - Variable in class jm.kidney.PresetsDialog
rasterTransformation - Variable in class jm.kidney.AnalysisDialog
read() - Method in class jm.jigl.SignalInputStream
  Reads in the Signal
read() - Method in class jm.jigl.ImageInputStream
  Reads in the Image
readHeader() - Method in class jm.jigl.SignalInputStream
  Reads the file header: determines type, size and range of values
readHeader() - Method in class jm.jigl.ImageInputStream
  Reads the file header: determines type, size and range of values
readMagic() - Method in class jm.jigl.SignalInputStream
  Gets the magic number and returns the type
readMagic() - Method in class jm.jigl.ImageInputStream
  Gets the magic number and returns the type
real - Variable in class jm.jigl.ComplexSignal
  The Real plane of the signal
real - Variable in class jm.jigl.ComplexImage
  The Real plane of the image
real() - Method in class jm.jigl.ComplexSignal
  Makes a shallow copy of the real plane
real() - Method in class jm.jigl.ComplexImage
  Returns the real plane of this image
real() - Method in class jm.jigl.Complex
  Returns the real part of the complex number
real(double) - Method in class jm.jigl.Complex
  Set the real part of the complex number and returns old value
RealGrayImage - class jm.jigl.RealGrayImage.
  RealGrayImage is a 2-d array of floats
RealGrayImage() - Constructor for class jm.jigl.RealGrayImage
  Creates an empty two dimensional RealGrayImage with a height and width of zero
RealGrayImage(float[][]) - Constructor for class jm.jigl.RealGrayImage
  Creates a two dimensional GrayImage from a two dimensional array
RealGrayImage(Image) - Constructor for class jm.jigl.RealGrayImage
  Creates a two dimensional RealGrayImage from the standard java.awt.Image
RealGrayImage(int, int) - Constructor for class jm.jigl.RealGrayImage
  Creates a two dimensional RealGrayImage with a height and width of x and y repectively
RealGrayImage(int, int, float[]) - Constructor for class jm.jigl.RealGrayImage
  Creates a two dimensional GrayImage with a height and width of x and y repectively
RealGrayImage(RealGrayImage) - Constructor for class jm.jigl.RealGrayImage
  Creates an two dimensional RealGrayImage (shallow copy) from RealGrayImage img
RealSignal - class jm.jigl.RealSignal.
  A discrete signal is a 1-d of floats RealSignal implements Signal
RealSignal() - Constructor for class jm.jigl.RealSignal
  Creates an empty one dimensional RealSignal with a height and width of zero
RealSignal(int) - Constructor for class jm.jigl.RealSignal
  Creates an empty one dimensional of length x
RealSignal(RealSignal) - Constructor for class jm.jigl.RealSignal
  Creates a one dimensional RealSignal (shallow copy) for a RealSignal
result - Variable in class jm.extension.AddRoiDialog
ResultLog - class jm.cepstrum.ResultLog.
  Ermoeglicht das Schreiben von Strings in eine Protokolldatei.
ResultLog(String) - Constructor for class jm.cepstrum.ResultLog
  Der Konstruktor.
RIGHT - Static variable in class jm.util.JMConst
rightRefImage - Variable in class jm.sit.SITAnalysis
ROI - class jm.jigl.ROI.
  The ROI class is the Region of Interest of a JIGL Signal
ROI() - Constructor for class jm.jigl.ROI
  Creates a Region of Interest initialized to (0,0,0,0)
ROI(int, int, int, int) - Constructor for class jm.jigl.ROI
  Creates a Region of Interest initialized to (a,b,c,d)
run() - Method in class jm.cepstrum.CepstrumAnalysis
  Haupt-Berechnungsmethode der Klasse.
run() - Method in class jm.extension.TimerThread
  Method declaration
run() - Method in class jm.extension.ExStackWindow
  Startet den Thread zur Ueberwachung des Schiebereglers.
run() - Method in class jm.sit.SITAnalysis
  Haupt-Berechnungsmethode der Klasse.

## S

ScaleDialog - class jm.scaler.ScaleDialog.
  Diese Klasse zeigt einen Dialog an, mit dem die Bilddimensionen veraendert werden koennen.
ScaleDialog(ImagePlus) - Constructor for class jm.scaler.ScaleDialog
  Der Konstruktor.
secondChance - Variable in class jm.kidney.PresetsDialog
secondChance - Variable in class jm.kidney.AnalysisDialog
seriesDate - Variable in class jm.cepstrum.CepstrumAnalysis
seriesDate - Variable in class jm.kidney.AnalysisDialog
seriesLoaded - Variable in class jm.kidney.AnalysisDialog
set(int, float) - Method in class jm.jigl.RealSignal
  Sets the sample value at x, y to a given value
set(int, float, float) - Method in class jm.jigl.ComplexSignal
  Sets the pixel value at x to a given value of this signal
set(int, float, float, ROI) - Method in class jm.jigl.ComplexSignal
  Sets the pixel value at x to a given value in a Region of Interest
set(int, float, ROI) - Method in class jm.jigl.RealSignal
  Sets the sample value at x, y to a given value
set(int, int) - Method in class jm.jigl.DiscreteSignal
  Sets the sample value at x, y to a given value
set(int, int, float) - Method in class jm.jigl.RealGrayImage
  Sets the pixel value at x, y to a given value
set(int, int, float, float) - Method in class jm.jigl.ComplexImage
  Sets the pixel value at x, y to a given value of this image
set(int, int, float, float, ROI) - Method in class jm.jigl.ComplexImage
  Sets the pixel value at x, y to a given value in a Region of Interest
set(int, int, float, ROI) - Method in class jm.jigl.RealGrayImage
  Sets the pixel value at x, y to a given value in a Region of Interest
set(int, int, int) - Method in class jm.jigl.GrayImage
  Sets the pixel value at x, y to a given value
set(int, int, int, ROI) - Method in class jm.jigl.GrayImage
  Sets the pixel value at x, y to a given value in a Region of Interest
set(int, int, ROI) - Method in class jm.jigl.DiscreteSignal
  Sets the sample value at x, y to a given value
setAccuracy(double) - Method in class jm.cepstrum.CepstrumAnalysis
  Hilfsmethode.
setAcquisitionTime(String[]) - Method in class jm.extension.ExImageCanvas
  Setzt die angezeigten Aufnahmezeiten der Bilder.
setAdjustmentRange(double, double) - Method in class jm.sit.SITResults
  Setzt den Wertebereich, innerhalb dem die Schwellenwerte veraendert werden koennen.
setAdjustmentRange(double, double) - Method in class jm.sit.SITAnalysis
  Setzt den Wertebereich, innerhalb dem die Schwellenwerte veraendert werden koennen.
setAdjustmentRange(double, double) - Method in class jm.sit.SITAdjuster
  Setzt den Wertebereich der Schieberegler.
setApplySobel(boolean) - Method in class jm.cepstrum.Cepstrum
  Hilfsmethode.
setApplyWindow(boolean) - Method in class jm.cepstrum.Cepstrum
  Hilfsmethode.
setAverageCurveColor(Color) - Method in class jm.sit.JLabelResults
  Setzt die Farbe der Kurve fuer die Darstellung der mittleren Grauwerte.
setAverageGray(int, double[]) - Method in class jm.sit.JLabelResults
  Uebergibt die Daten der Kruve fuer den mittleren Grauwert.
setAverageGray(int, int, double[]) - Method in class jm.sit.SITResults
  Setzt fuer einen bestimmten Gewebetyp die Kurvendaten fuer die Kurve des mittleren Grauwertes.
setBorder(int) - Method in class jm.sit.ImageLabel
  Sets the border thickness.
setBorderColor(Color) - Method in class jm.sit.ImageLabel
  Sets the border color.
setBounds(int, int, int, int) - Method in class jm.sit.ImageLabel
  Resizes the ImageLabel.
setCepstrumResult(int, int, int) - Method in class jm.kidney.AnalysisDialog
  Setzt das Ergebnis der Kepstrum-Filterung in einer Bildhaelfte des BIldstapelfensters.
setCepstrumResult(int, int, String) - Method in class jm.extension.ExImageCanvas
  Setzt die angezeigte Qualitaet (=Ergebnis) der Translationskorrektur
setDefaultImageString(String) - Static method in class jm.sit.ImageLabel
  Sets the string representing the URL that will be used if none is supplied in the constructor.
setDestroyInputImages(boolean) - Method in class jm.cepstrum.Cepstrum
  Hilfsmethode.
setDeviationCurveColor(Color) - Method in class jm.sit.JLabelResults
  Setzt die Farbe der Kurve fuer die Darstellung der Standardabweichung
setDevScaleFactor(double) - Method in class jm.sit.JLabelResults
  Setzt den Skalierungsfaktor fuer die Darstellung der Stadardabweichung.
setDevScaleFactor(double, int) - Method in class jm.sit.SITResults
  Hilfsmethode.
setDismissDelay(int) - Method in class jm.extension.TimerThread
  Setzt die Zeit bis zum Ausblenden eines bereits eingeblendeten Tooltips.
setDismissDelay(int) - Method in class jm.extension.AwtToolTip
  Setzt die Verzoegerung in Millisekunden, nach der ein ToolTip ausgeblendet werden soll.
setDrawBox(boolean) - Method in class jm.jigl.ImageCanvas
  Sets the drawing of the Region of Interest box to true or false
setForeground(Color) - Method in class jm.extension.ExJButton
  Ueberschreibt die Methode der Oberklasse und brechnet aus der uebergebenen Farbe die Farbe fuer den inaktiven Vordergrund.
setImag(int, float) - Method in class jm.jigl.ComplexSignal
  Sets the pixel value at x to a given value of the imaginary
setImag(int, float, ROI) - Method in class jm.jigl.ComplexSignal
  Sets the pixel value at the given x value of a Region of Interest in the imaginary plane
setImag(int, int, float) - Method in class jm.jigl.ComplexImage
  Sets the pixel value at x, y to a given value of the imaginary
setImag(int, int, float, ROI) - Method in class jm.jigl.ComplexImage
  Sets the pixel value at the given x, y value of a Region of Interest in the imaginary plane
setImag(RealGrayImage) - Method in class jm.jigl.ComplexImage
  Set the real plane of this image
setImag(RealSignal) - Method in class jm.jigl.ComplexSignal
  Set the real plane of this signal
setImage(Image) - Method in class jm.jigl.ImageCanvas
  Sets the JIGL image to img and Java Image to null
setImage(Image) - Method in class jm.jigl.ImageCanvas
  Sets the JIGL Image and Java Image to img
setImage(Image) - Method in class jm.sit.ImageLabel
  Sets Image associated with the ImageLabel.
setInitialDelay(int) - Method in class jm.extension.TimerThread
  Setzt die Zeit bis zum Einblenden eines Tooltips.
setInitialDelay(int) - Method in class jm.extension.AwtToolTip
  Setzt die Verzoegerung in Millisekunden, nach der ein ToolTip eingeblendet werden soll, wenn die Maus nicht bewegt wird.
setIsDebugging(boolean) - Method in class jm.sit.ImageLabel
  Set the debugging flag.
setLastMoveTime(long) - Method in class jm.extension.TimerThread
  Setzt die Zeit bis zum Ausbelnden eines ToolTips, wenn die Maus vom GUI-Objekt herunterbewegt wird.
setManualSelector(int, boolean) - Method in class jm.extension.ExImageCanvas
  Zulassen aller Halbbilder zur Berechnung der SIT-Kurven
setMinDiff(int) - Method in class jm.cepstrum.CepstrumAnalysis
  Hilfsmethode.
setMinMaxAxisValues(int) - Method in class jm.sit.SITAnalysis
  Berechnet der minimalen und maximalen Intensitaetswerte der SIT-Kurven.
setOffScreen() - Method in class jm.jigl.ImageCanvas
  Returns an instance of Graphics that, when modified, modifies the Java image
setOffScreen(double, double) - Method in class jm.jigl.ImageCanvas
  Returns an instance of Graphics that, when modified, modifies the Java image
setParent(AnalysisDialog) - Method in class jm.extension.ExImageCanvas
  Setzt das Vater-Objekt zur einfacheren Uebernahme von Paramerten und Enstellungen
setReal(int, float) - Method in class jm.jigl.ComplexSignal
  Sets the pixel value at x to a given value of the real plane
setReal(int, float, ROI) - Method in class jm.jigl.ComplexSignal
  Sets tthe pixel value at the given x value of a Region of Interest in the real plane
setReal(int, int, float) - Method in class jm.jigl.ComplexImage
  Sets the pixel value at x, y to a given value of the real plane
setReal(int, int, float, ROI) - Method in class jm.jigl.ComplexImage
  Sets tthe pixel value at the given x, y value of a Region of Interest in the real plane
setReal(RealGrayImage) - Method in class jm.jigl.ComplexImage
  Set the real plane of this image
setReal(RealSignal) - Method in class jm.jigl.ComplexSignal
  Set the real plane of this signal
setROI(int, int, int, int) - Method in class jm.jigl.ROI
  Sets the Region of Interest
setRoi(int, int, Roi) - Method in class jm.extension.ExImageCanvas
  Setzt die Haupt-ROI fuer die ganze Niere fuer ein angegebenes Halbbild der Sequenz
setRoi(int, Roi) - Method in class jm.extension.ExImageCanvas
  Setzt die Haupt-ROI fuer die ganze Niere fuer alle Halbbilder der Sequenz
setSecondChance(boolean) - Method in class jm.cepstrum.CepstrumAnalysis
  Hilfsmethode.
setSize(int, int) - Method in class jm.sit.ImageLabel
  Resizes the ImageLabel.
setSmooth(boolean) - Method in class jm.sit.SITResults
  Hilfsmethode.
setSourceClass(ExImageCanvas) - Method in class jm.extension.TimerThread
  Setzt die Refernz auf das GUI-Objekt, auf dem die ToolTips dargestellt werden Sollen.
setSourceClass(ExImageCanvas) - Method in class jm.extension.AwtToolTip
  Setzt die Refernz auf den ExImageCanvas, auf dem die ToolTips angzeigt werden sollen.
setStandardDeviation(int, double[]) - Method in class jm.sit.JLabelResults
  Uebergibt die Daten der Kruve fuer die Standardabweichung
setStandardDeviation(int, int, double[]) - Method in class jm.sit.SITResults
  Setzt fuer einen bestimmten Gewebetyp die Kurvendaten fuer die Kurve der Standardabweichung.
setStartImage(int) - Method in class jm.sit.SITAnalysis
  Hilfsmethode.
setText(String) - Method in class jm.sit.JLabelResults
  Setzt die Achsenbeschriftung der y-Achse.
setTextColor(Color) - Method in class jm.extension.ExImageCanvas
  Setzt die Farbe des Informationstextes auf dem Canvas
setVerbose(boolean) - Method in class jm.cepstrum.CepstrumAnalysis
  Hilfsmethode.
setVerbose(boolean) - Method in class jm.cepstrum.Cepstrum
  Steuert die textuelle Ausgabe von Zwischenergebnissen im ImageJ-Hauptfenster
setVerbose(boolean) - Method in class jm.sit.SITAnalysis
  Hilfsmethode.
setVisible(boolean) - Method in class jm.jigl.ImageCanvas
  Overrides Component.setVisible(boolean)
setWriteLog(boolean) - Method in class jm.cepstrum.CepstrumAnalysis
  Hilfsmethode.
setWriteLog(boolean) - Method in class jm.cepstrum.Cepstrum
  Steuert die Ausgabe von Zwischenergebnissen in die Protokolldatei (LogFile)
setXMarks(int) - Method in class jm.sit.JLabelResults
  Setzt die Anzahl der Unterteilungsstriche auf der x-Achse des Koordinatensystems.
setXMarks(int, int) - Method in class jm.sit.SITResults
  Hilfsmethode.
setXScale(int, double[]) - Method in class jm.sit.SITResults
  Hilfsmethode.
setXScale(int, int) - Method in class jm.sit.JLabelResults
  Setzt die Skalierung der X-Achse.
setXScale(int, int, int) - Method in class jm.sit.SITResults
  Hilfsmethode.
setXText(int, String) - Method in class jm.sit.SITResults
  Hilfsmethode.
setYMarks(int) - Method in class jm.sit.JLabelResults
  Setzt die Anzahl der Unterteilungsstriche auf der y-Achse des Koordinatensystems.
setYMarks(int, int) - Method in class jm.sit.SITResults
  Hilfsmethode.
setYScale(int, double[]) - Method in class jm.sit.SITResults
  Hilfsmethode.
setYScale(int, int) - Method in class jm.sit.JLabelResults
  Setzt die Skalierung der Y-Achse.
setYScale(int, int, int) - Method in class jm.sit.SITResults
  Hilfsmethode.
setYText(int, String) - Method in class jm.sit.SITResults
  Hilfsmethode.
Shift - class jm.jigl.Shift.
  Shifts an image
Shift(int, int, int) - Constructor for class jm.jigl.Shift
  Constructs a shift
showAverageGrayValues(boolean) - Method in class jm.sit.JLabelResults
  Legt fest, ob die Kurve fuer die mittleren Grauwerte angezeigt wird.
showImages - Variable in class jm.cepstrum.Cepstrum
showMarks(boolean) - Method in class jm.sit.JLabelResults
  Legt fest, ob die Markierungen an den Kurvenpunkten angezeigt werden.
showNullValues - Variable in class jm.kidney.PresetsDialog
showNullValues - Variable in class jm.kidney.AnalysisDialog
showNullValues(boolean) - Method in class jm.sit.JLabelResults
  Legt fest, ob die Nullwerte innerhalb der Kurve angezeigt werden.
showSlice(int) - Method in class jm.extension.ExStackWindow
  Zeigt die mit dem Schieberegler eingestellte Bildnummer der Sequenz an und updated den Fenstertext in der Statuszeile ueber dem Bild.
showStandardDeviationValues(boolean) - Method in class jm.sit.JLabelResults
  Legt fest, ob die Kurve fuer die Standdardabweichungen angezeigt wird.
showToolTip - Variable in class jm.extension.TimerThread
showToolTip() - Method in class jm.extension.AwtToolTip
  Fragt ab, ob z.Zt ein ToolTip angezeigt werden soll.
sign() - Method in class jm.jigl.Complex
  Performs the function on the complex number
Signal - interface jm.jigl.Signal.
  Signal is the base class for ComplexSignal, ConvertSignal, DiscreteSignal In addition, all typed signal classes must support the following typed methods:get set clear ...
SignalInputStream - class jm.jigl.SignalInputStream.
  Class declaration
SignalInputStream(SignalInputStream) - Constructor for class jm.jigl.SignalInputStream
  Makes a new SignalInputStream from another SignalInputStream
SignalInputStream(String) - Constructor for class jm.jigl.SignalInputStream
  Opens a SignalInputStream from a filename
SignalInputStream(String, int) - Constructor for class jm.jigl.SignalInputStream
  Opens a SignalInputStream from a filename
SignalNotSupportedException - exception jm.jigl.SignalNotSupportedException.
  Exception for a signal that is not suppoeted by an operation
SignalNotSupportedException() - Constructor for class jm.jigl.SignalNotSupportedException
SignalOutputStream - class jm.jigl.SignalOutputStream.
  SignalOutputStream outputs signals to a file that JIGL can read.
SignalOutputStream() - Constructor for class jm.jigl.SignalOutputStream
  Default SignalOutputStream, does nothing
SignalOutputStream(SignalOutputStream) - Constructor for class jm.jigl.SignalOutputStream
  Creates an SignalOutputStream from another SignalOutputStream
SignalOutputStream(String) - Constructor for class jm.jigl.SignalOutputStream
  Creates an SignalOutputStream from a filename
sin() - Method in class jm.jigl.Complex
  Returns the sine of this complex number
sinh() - Method in class jm.jigl.Complex
  Returns the hyperbolic sine of this complex number
SITAdjuster - class jm.sit.SITAdjuster.
  Realisiert einen Dialog zur Justierung der Pixel-Klassifizierung.
SITAdjuster(SITAnalysis, Image, Image) - Constructor for class jm.sit.SITAdjuster
  Der Konstruktor.
SITAnalysis - class jm.sit.SITAnalysis.
  Klasse zur Berechnung der Signal-Intensitaets-Zeit-Kurven.
SITAnalysis(AnalysisDialog) - Constructor for class jm.sit.SITAnalysis
  Der Konstruktor.
sitFinished() - Method in class jm.kidney.AnalysisDialog
  Wird von der SIT-Berechnungsklasse aufgerufen, wenn die Berechnung der Signal-Intensitaets-Zeit-Kurven abgeschlossen ist.
sitResults - Variable in class jm.sit.SITAnalysis
SITResults - class jm.sit.SITResults.
  Diese Klasse realisiert einen Dialog zur Anzeige der berechneten Signal-Intensitaets-Zeit-Kurven.
SITResults(SITAnalysis, ImagePlus, ImagePlus) - Constructor for class jm.sit.SITResults
  Der Konstruktor.
slice - Variable in class jm.extension.ExStackWindow
sliceSelector - Variable in class jm.extension.ExStackWindow
smoothCurves(boolean, int) - Method in class jm.sit.SITResults
  Legt fest, ob einen Kurve der angegebenen Gewebetyps fuer die Dasstellung geglaettet werden soll.
splashScreen - Variable in class jm.kidney.PresetsDialog
splashScreen - Variable in class jm.kidney.AnalysisDialog
sqrSum() - Method in class jm.jigl.RealGrayImage
  Adds the square of all the values together
sqrSum() - Method in class jm.jigl.GrayImage
  Adds the square of all the values together
sqrt() - Method in class jm.jigl.Complex
  Returns the square root of this complex number
stackWindow - Variable in class jm.kidney.AnalysisDialog
started - Variable in class jm.extension.TimerThread
startImage - Variable in class jm.kidney.AnalysisDialog
stateChanged(ChangeEvent) - Method in class jm.kidney.PresetsDialog
  Routine zur Nachrichtenbehandung von Schiebereglern.
stateChanged(ChangeEvent) - Method in class jm.kidney.ManualMover
  Routine zur Nachrichtenbehandung.
stateChanged(ChangeEvent) - Method in class jm.kidney.AnalysisDialog
  Stellt fest, ob der Schieberegler zur Einstellung der Analysegenauigkiet veraendert wurde.
stateChanged(ChangeEvent) - Method in class jm.sit.SITAdjuster
  Wird aufgerufen, wenn einer der Schieberegler zur Justierung der Schwellenwerte vom Benutzer veraendert wird.
stopped - Variable in class jm.extension.TimerThread
stopRunning - Variable in class jm.cepstrum.CepstrumAnalysis
stopRunning - Variable in class jm.sit.SITAnalysis
studyDate - Variable in class jm.cepstrum.CepstrumAnalysis
studyDate - Variable in class jm.kidney.AnalysisDialog
sub(Complex) - Method in class jm.jigl.Complex
  Subtracts another complex number from this complex number
sub(Complex, Complex) - Static method in class jm.jigl.Complex
  Subtracts two complex numbers
sub(double) - Method in class jm.jigl.Complex
  Subtracts a constant from the real part of this complex number
subtract(ComplexImage) - Method in class jm.jigl.ComplexImage
  Subtracts another ComplexImage from this image
subtract(ComplexImage, ROI, ROI) - Method in class jm.jigl.ComplexImage
  Subtracts a Region of Interest in another GrayImage from a Region of Interest of this image
subtract(ComplexSignal) - Method in class jm.jigl.ComplexSignal
  Subtracts another ComplexSignal from this signal
subtract(ComplexSignal, ROI, ROI) - Method in class jm.jigl.ComplexSignal
  Subtracts a Region of Interest in another GraySignal from a Region of Interest of this signal
subtract(DiscreteSignal) - Method in class jm.jigl.DiscreteSignal
  Subtracts a DiscreteSignal from this signal
subtract(DiscreteSignal, ROI, ROI) - Method in class jm.jigl.DiscreteSignal
  Adds a Region of Interest of another DiscreteSignal to a Region of Interest of this signal
subtract(float) - Method in class jm.jigl.RealSignal
  Subtracts a value from all the samples in this signal
subtract(float) - Method in class jm.jigl.RealGrayImage
  Subtracts a value from all the pixels in this image
subtract(float, float) - Method in class jm.jigl.ComplexSignal
  Subtracts a value from all the pixels in this signal
subtract(float, float) - Method in class jm.jigl.ComplexImage
  Subtracts a value from all the pixels in this image
subtract(float, float, ROI) - Method in class jm.jigl.ComplexSignal
  Subtracts a value from all the pixels in a Region of Interest
subtract(float, float, ROI) - Method in class jm.jigl.ComplexImage
  Subtracts a value from all the pixels in a Region of Interest
subtract(float, ROI) - Method in class jm.jigl.RealSignal
  Subtracts a value from all the samples in in a Region of Interest
subtract(float, ROI) - Method in class jm.jigl.RealGrayImage
  Subtracts a value from all the pixels in a Region of Interest
subtract(GrayImage) - Method in class jm.jigl.GrayImage
  Subtracts a GrayImage from this image
subtract(GrayImage, ROI, ROI) - Method in class jm.jigl.GrayImage
  Subtracts a Region of Interest in another GrayImage from a Region of Interest of this image
subtract(int) - Method in class jm.jigl.GrayImage
  Subtracts a value from all the pixels in this image
subtract(int) - Method in class jm.jigl.DiscreteSignal
  Subtracts a value from all the samples in this signal
subtract(int, float) - Method in class jm.jigl.RealSignal
  Subtracts a value from a single sample
subtract(int, float, float) - Method in class jm.jigl.ComplexSignal
  Subtracts a value from a single pixel
subtract(int, float, float, ROI) - Method in class jm.jigl.ComplexSignal
  Subtracts a value from a single pixel in a Region of Interest
subtract(int, float, ROI) - Method in class jm.jigl.RealSignal
  Subtracts a value from a single sample
subtract(int, int) - Method in class jm.jigl.DiscreteSignal
  Subtracts a value from a single sample
subtract(int, int, float) - Method in class jm.jigl.RealGrayImage
  Subtracts a value from a single pixel
subtract(int, int, float, float) - Method in class jm.jigl.ComplexImage
  Subtracts a value from a single pixel
subtract(int, int, float, float, ROI) - Method in class jm.jigl.ComplexImage
  Subtracts a value from a single pixel in a Region of Interest
subtract(int, int, float, ROI) - Method in class jm.jigl.RealGrayImage
  Subtracts a value from a single pixel in a Region of Interest
subtract(int, int, int) - Method in class jm.jigl.GrayImage
  Subtracts a value from a single pixel
subtract(int, int, int, ROI) - Method in class jm.jigl.GrayImage
  Subtracts a value from a single pixel in a Region of Interest
subtract(int, int, ROI) - Method in class jm.jigl.DiscreteSignal
  Subtracts a value from a single sample
subtract(int, ROI) - Method in class jm.jigl.GrayImage
  Subtracts a value from all the pixels in a Region of Interest
subtract(int, ROI) - Method in class jm.jigl.DiscreteSignal
  Subtracts a value from all the samples in in a Region of Interest
subtract(RealGrayImage) - Method in class jm.jigl.RealGrayImage
  Subtracts a RealGrayImage from this image
subtract(RealGrayImage, ROI, ROI) - Method in class jm.jigl.RealGrayImage
  Subtracts a Region of Interest in another RealGrayImage from a Region of Interest of this image
subtract(RealSignal) - Method in class jm.jigl.RealSignal
  Subtracts a RealSignal from this signal
subtract(RealSignal, ROI, ROI) - Method in class jm.jigl.RealSignal
  Adds a Region of Interest of another RealSignal to a Region of Interest of this signal
surfaceCortex - Variable in class jm.sit.SITAnalysis
surfaceKidney - Variable in class jm.sit.SITAnalysis
surfaceMedulla - Variable in class jm.sit.SITAnalysis
switchToMinDiff - Variable in class jm.kidney.AnalysisDialog

## T

test - Variable in class jm.kidney.AnalysisDialog
thread - Variable in class jm.extension.ExStackWindow
threadPriority - Variable in class jm.kidney.PresetsDialog
threadPriority - Variable in class jm.kidney.AnalysisDialog
TimerThread - class jm.extension.TimerThread.
  Steuert die Einblen- und Ausblendzeiten fuer die Awt-Tooltips
TimerThread() - Constructor for class jm.extension.TimerThread
  Der Konstruktor.
timeTE - Variable in class jm.kidney.AnalysisDialog
timeTR - Variable in class jm.kidney.AnalysisDialog
toComplex(ComplexSignal) - Static method in class jm.jigl.ConvertSignal
  Converts a ComplexSignal to a ComplexSignal
toComplex(DiscreteSignal) - Static method in class jm.jigl.ConvertSignal
  Converts a DiscreteSignal to a ComplexSignal
toComplex(RealSignal) - Static method in class jm.jigl.ConvertSignal
  Converts a RealSignal to a ComplexSignal
toComplex(Signal) - Static method in class jm.jigl.ConvertSignal
  Converts a Signal to a ComplexSignal
toDiscrete(ComplexSignal) - Static method in class jm.jigl.ConvertSignal
  Converts a ComplexSignal to a DiscretetSignal
toDiscrete(DiscreteSignal) - Static method in class jm.jigl.ConvertSignal
  Converts a DiscreteSignal to a DiscretetSignal
toDiscrete(RealSignal) - Static method in class jm.jigl.ConvertSignal
  Converts a RealSignal to a DiscretetSignal
toDiscrete(Signal) - Static method in class jm.jigl.ConvertSignal
  Converts a Signal to a DescreteSignal
toRealDiscrete(ComplexSignal) - Static method in class jm.jigl.ConvertSignal
  Converts a ComplexSignal to a RealSignal
toRealDiscrete(DiscreteSignal) - Static method in class jm.jigl.ConvertSignal
  Converts a DiscreteSignal to a RealSignal
toRealDiscrete(RealSignal) - Static method in class jm.jigl.ConvertSignal
  Converts a RealSignal to a RealSignal
toRealDiscrete(Signal) - Static method in class jm.jigl.ConvertSignal
  Converts a Signal to a RealSignal
toString() - Method in interface jm.jigl.Signal
  Returns the string representation of a signal
toString() - Method in class jm.jigl.RealSignal
  Prints the string in float format.
toString() - Method in class jm.jigl.RealGrayImage
  Prints the string in integer format.
toString() - Method in interface jm.jigl.Image
  Returns a string representation of an image
toString() - Method in class jm.jigl.GrayImage
  Prints this image in integer format.
toString() - Method in class jm.jigl.DiscreteSignal
  Prints the string in integer format.
toString() - Method in class jm.jigl.ComplexSignal
  Prints the string in integer format.
toString() - Method in class jm.jigl.ComplexImage
  Prints the image in integer format.
toString() - Method in class jm.jigl.Complex
  Return the string representation of this complex number
toString() - Method in class jm.util.GridBagConstraints2
  Method declaration
toString(ROI) - Method in class jm.jigl.RealSignal
  Prints the string in float format.
toString(ROI) - Method in class jm.jigl.RealGrayImage
  Prints the string in integer format in a Region of Interest.
toString(ROI) - Method in class jm.jigl.GrayImage
  Prints a Region of Interest in integer format.
toString(ROI) - Method in class jm.jigl.DiscreteSignal
  Prints the string in integer format.
toString(ROI) - Method in class jm.jigl.ComplexSignal
  Prints the string in integer format.
toString(ROI) - Method in class jm.jigl.ComplexImage
  Prints the Region of Interest in integer format.
type() - Method in class jm.jigl.SignalInputStream
  Returns the type of signal UNKNOWN = 0 PDS_ASCII = 1 -- not Implemented PRS_ASCII = 2 -- not Implemented PDS_RAW = 3 PRS_RAW = 4
type() - Method in class jm.jigl.ImageInputStream
  Returns the type of image UNKNOWN = 0 PGM_ASCII = 1 PGM_ASCII = 2 PPM_ASCII = 3 PBM_RAW = 4 PGM_RAW = 5 PPM_RAW = 6 GIF = 7 -- not yet implemented JPEG = 8 -- not yet implemented TIFF = 9 -- not yet implemented JIGL_GRAY = 10 JIGL_COLOR = 11

## U

UnknownSignalTypeException - exception jm.jigl.UnknownSignalTypeException.
  Exception when the signal is of an unknown type
UnknownSignalTypeException() - Constructor for class jm.jigl.UnknownSignalTypeException
unlock() - Method in class jm.extension.ExStackWindow
  Hebt die Sperrung des Fensters wieder auf
update(Graphics) - Method in class jm.jigl.ImageCanvas
  Repaints the ImageCanvas (including the selection box).
updateImage(int, Image) - Method in class jm.sit.SITAdjuster
  Aktualisiert das Klassifizierungsbild.
updateImageLabel(int, ImagePlus) - Method in class jm.sit.SITResults
  Aktualisiert die Darstellung des Klassifizierungsbildes im Dailogfenster.
updateMainFrame(boolean) - Method in class jm.sit.SITResults
  Zusaetzliche Initialisierung des Mainframes.
ux() - Method in class jm.jigl.ROI
  Returns the upper x corner of the Region of Interest
uy() - Method in class jm.jigl.ROI
  Returns the upper y corner of the Region of Interest

## V

verboseResults - Variable in class jm.kidney.AnalysisDialog
verboseSIT - Variable in class jm.kidney.PresetsDialog
verboseSIT - Variable in class jm.kidney.AnalysisDialog
verboseText - Variable in class jm.kidney.PresetsDialog

## W

waitForImage(boolean) - Method in class jm.sit.ImageLabel
  Makes sure that the Image associated with the Canvas is done loading before returning, since loadImage spins off a separate thread to do the loading.
windowActivated(WindowEvent) - Method in class jm.kidney.AnalysisDialog
  Hilfsklasse.
windowClosed(WindowEvent) - Method in class jm.kidney.AnalysisDialog
  Hilfsklasse.
windowClosing(WindowEvent) - Method in class jm.kidney.AnalysisDialog
  Hilfsklasse.
windowDeactivated(WindowEvent) - Method in class jm.kidney.AnalysisDialog
  Hilfsklasse.
windowDeiconified(WindowEvent) - Method in class jm.kidney.AnalysisDialog
  Hilfsklasse.
windowIconified(WindowEvent) - Method in class jm.kidney.AnalysisDialog
  Hilfsklasse.
windowOpened(WindowEvent) - Method in class jm.kidney.AnalysisDialog
  Hilfsklasse.
write(DiscreteSignal) - Method in class jm.jigl.SignalOutputStream
  Writes a GraySignal to a file
write(RealSignal) - Method in class jm.jigl.SignalOutputStream
  Writes a RealSignal to a file
write(Signal) - Method in class jm.jigl.SignalOutputStream
  Writes a JIGL signal to a file
writeLog - Variable in class jm.kidney.PresetsDialog
writeLog - Variable in class jm.kidney.AnalysisDialog

## X

x - Variable in class jm.jigl.Complex
  the real part of the Complex number
X - Variable in class jm.jigl.SignalOutputStream
  Height of the signal
X - Variable in class jm.jigl.SignalInputStream
  Width of the signal
X - Variable in class jm.jigl.RealGrayImage
  Cartesian width
X - Variable in class jm.jigl.ImageInputStream
  Width of the image (Protected)
X - Variable in class jm.jigl.GrayImage
  Cartesian width
X - Variable in class jm.jigl.ComplexImage
  Cartesian width of the image
X() - Method in class jm.jigl.SignalOutputStream
  Returns the width
X() - Method in class jm.jigl.SignalInputStream
  Returns the width of the signal
X() - Method in class jm.jigl.ROI
  Returns the width of the Region of Interest
X() - Method in class jm.jigl.RealGrayImage
  Returns the width (maximum X value)
X() - Method in class jm.jigl.ImageInputStream
  Returns the width of the image
X() - Method in interface jm.jigl.Image
  Returns the width of the image
X() - Method in class jm.jigl.GrayImage
  Returns the width (maximum X value)
X() - Method in class jm.jigl.ComplexImage
  Returns the width (maximum X value)

## Y

y - Variable in class jm.jigl.Complex
  imaginary part of the Complex number
Y - Variable in class jm.jigl.RealGrayImage
  Cartesian height
Y - Variable in class jm.jigl.ImageInputStream
  Height of the image (Protected)
Y - Variable in class jm.jigl.GrayImage
  Cartesian height
Y - Variable in class jm.jigl.ComplexImage
  Cartesian height of the image
Y() - Method in class jm.jigl.ROI
  Returns the height of the Region of Interest
Y() - Method in class jm.jigl.RealGrayImage
  Returns the height (maximum Y value)
Y() - Method in class jm.jigl.ImageInputStream
  Returns the height of the image
Y() - Method in interface jm.jigl.Image
  Returns the height of the image
Y() - Method in class jm.jigl.GrayImage
  Returns the height (maximum Y value)
Y() - Method in class jm.jigl.ComplexImage
  Returns the height (maximum Y value)

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